Search Results for "format raw"
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Showing 24 open source projects for "format raw"
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mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
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The C-Munipack is an astrophotometry software package, which offers a complete solution for reduction of images carried out by CCD or DSLR camera, intended on a observation of variable stars, exoplanets and minor Solar System bodies. It provides a simple and intuitive graphical user interface.
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NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering,... -
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PGMania
Astrophotography image & video processor. Full processing cycle
PGMania is a universal package for processing deep space images. The program provides wide and unique functionality, a powerful and flexible tool with a clear and user-friendly interface. The program performs all image processing cycles for astrophotography, including filtering, cleaning, aligning, image calibrating, stacking, post-processing, format conversion, cropping, rotations, many special operations and much more. PGMania is environmentally friendly - it does not clutter your photos... -
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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FastQC
A quality control analysis tool for high throughput sequencing data
FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should then direct you to where your data may have problems and allow you to take necessary steps to correct it before doing any further analysis. ... -
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coronavirus
The coronavirus dataset
The coronavirus package gives a tidy format dataset of the 2019 Novel Coronavirus COVID-19 (2019-nCoV) epidemic. Relevant and updated information about the virus, such as summary of new cases by country and total number of cases by region can be retrieved from this package. The raw data is pulled and arranged by the Johns Hopkins University Center for Systems Science and Engineering, which is gathered from various leading sources including the World Health Organization, China CDC, US CDC, European Centre for Disease Prevention and Control, and Australia Government Department of Health. -
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sRNAWorkbench
The UEA sRNA Workbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data -
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dataMAPPs
R based pipeline for MHC-associated peptide proteomics (MAPPs) data
...Further documentation is supplied in PDF format. dataMAPPs is published under GPL license by a team of scientists working for Hoffmann-La Roche AG in Basel, Switzerland. The software is provided as is, to hopefully benefit other researchers. Related Publication in the Journal of Proteome Research: DOI: 10.1021/acs.jproteome.0c00309 -
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ImagingAnalysis
Direct tissue-level image quantification package for Mathematica
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11. -
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PB-sQF_BacterialTyping
Bacterial Typing from either assembled or raw short reads file
Probability Binning - signature Quadratic Form, PB-sQF, types unknown sequence to one of the 628 bacterial library genomes which gives the smallest test statistics thus most similar library strain. The input file is the k-mer counts of the unknown assembled genome sequence or raw short reads file in decimal format generated by KAnalyze developed by P. Audano et al. (https://sourceforge.net/projects/kanalyze/). The download included the library index, the library name and sample unknowns. -
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ICE Nigeria
Nigerian component of the International Corpus of English
...The corpus can be downloaded in several parts. The written part can be downloaded as text files, xml files and xml files with parts of speech tagging, both with or without the raw files. For the spoken part the eaf files (ELAN files in xml format) together with the text files can be downloaded separately from the sound files. In addition, we provide the corpus manual as well as metadata (speaker age, gender, ethnic group and profession) and XML specifications. -
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OVATION Prime
Seasonal model of the diffuse, monoenergetic, proton, and wave aurora.
...Documentation includes a model description and instructions for running the software. The README is available here: http://sourceforge.net/p/ovation-prime/code/HEAD/tree/trunk/README.pdf?format=raw A web interface for running the model for historical periods is available here: http://sd-www.jhuapl.edu/Aurora/ovation_prime/prime_display.html Realtime versions are running here: http://www.ngdc.noaa.gov/stp/ovation_prime/ http://www.swpc.noaa.gov/ovation/ -
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ismrmrd
ISMRM Raw Data File Format
We have moved to GitHub. web: http://gadgetron.github.io code: http://github.com/gadgetron/gadgetron discussion board: https://groups.google.com/forum/#!forum/ismrmrd -
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ASTERIX Display Analyse Record Replay
Processes, decodes, displays, records and replays EUROCONTROL ASTERIX
...Additionally supports: 1.ASTERIX stream Recording (up to 11 different data streams) 2.Replay of ASTERIX “replay” Recordings in the original or up to 10 X faster speed 3.Opening of ASTERIX “raw” recordings in raw format to analyze and visualize data in Local or Google Earth Display 4.Export of imported/captured data in KML/KMZ format in order to analyze/visualize it in Google Earth. 5.Export of live/replayed data in real time to Google Earth 6.Forwarding of ASTERIX data streams between networks or to a different multicast address/port. 7. ... -
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MiniKakofonix
Asterix UDP multicast recorder
This program is capable of subscribing to an UDP multicast feed containing (live) radar data in Eurocontrol Asterix format. The received UDP frames are stored in a recording file. A new (raw) Asterix recording file can be created every x minutes. The previously recorded Asterix filename contains date and timestamp. This tool can be used to do continuous 24/7 Asterix multicast recordings. -
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any2ufmf
Compress videos to ufmf format (micro fly movie format)
any2ufmf reads in videos of various formats and outputs a compressed UFMF (micro-fly movie format) video. I'm not sure what kinds of videos it reads -- whatever OpenCV reads. It has worked on uncompressed AVIs (BI_RGB Raw Bitmap), motion JPEG AVIs, and H.264 Quicktime MOV files. I wrote this program when debugging my video data capture code. It's interface is rather bare, but it may be useful to someone. Requirements: Windows 64 Operating System Microsoft Visual C++ 2010 Redistributable Package, available for download here: http://www.microsoft.com/en-us/download/details.aspx?... -
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The original C# .NET 4.0 DICOM library designed for rapid development of DICOM applications. the new library can be found at evildicom.rexcardan.com. The website has maintenance planned for 08.21.12 and will be down.
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Utility to convert PED genome file into RAW SNP format. Creates multiple files per person. Supports big files. The same conversion utility has been included into "aisconvert" toolkit, so this project is rather deprecated.
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This program provides for easy modification and viewing of SPICE circuit files. It will also read SPICE3 RAW format (as well as GnuCap) and create graphs of results through an interactive GUI. It supports waveform math, copying to clipboard, and saving.
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Optex Analyzer is a software to analyze and compare algorithms to solve approximately optimization problems. It has a GUI that allows select a set of input files containing raw algorithm results. The analysis is shown with tables and charts.
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libTopo and TopoMap are tools to use, convert, analyze and display topography maps such as ETOPO2, ETOPO5 and GLOBE. TopoMap is the command line interface to convert topography databases to raw data, images, etc...
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Application for converting raw data into longitude, latitude and other coordinates with integration into KML, GPX, GML and other formats. Uses large file support for MS Windows and provides real-time processing of data from websites, and etc...
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PARPs database is a web-based tool whose features include experiment annotation, protein database searching, protein sequence management.Statistical validation, , visualization, and converters from raw MS data open mzXML mzData format
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