Search Results for "evidence"
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Showing 17 open source projects for "evidence"
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Sparx' EA - MDG for TRAK
MDG for Sparx' Enterprise Architect to Create TRAK arch. descriptions
Custom add-in (MDG technology) for Sparx Systems Enterprise Architect UML modelling tool (https://sparxsystems.com/products/ea/index.html) to create architecture descriptions using TRAK https://sf.net/projects/trak Provides: - the set of TRAK views that can be represented using UML and SysML . Each view display a custom toolbox palette with the objects and relationships that are needed for that TRAK view - relationships can be made directly from the objects on a view using the... -
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EvidentialGene
Evidence Directed Gene Construction for Eukaryotes
...The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification. -
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FTimes
A forensic system baselining, searching, and evidence collection tool
FTimes is a forensic system baselining, searching, and evidence collection tool. Its primary purpose is to gather and/or develop topographical information and attributes about specified directories and files in a manner conducive to intrusion and forensic analysis. -
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Belief Reviser
Belief Revision via PS-Merge under constraints belief merging operator
Belief revision is a central topic in knowledge representation and reasoning. It consists in incorporating a new belief, changing as few as possible of the original beliefs while preserving consistency. Revision always considers new evidence as a better belief. Such new evidence is usually represented in the form of a propositional formula which must be preserved after the revision. Here, the Δps (PS-Merge) belief merging operator is extended in order to consider constraints, and this extension is used as a strategy for belief revision. The new evidence is treated as a constraint so the extended merging operator can obtain the revised belief base. -
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dFORC
Dynamic First Order Reversal Curve
Experimental technique based on the measurement of first-order reversal curves (FORCs) is typically used to evidence the intensity of interactions between the switching physical entities in ferromagnetic samples. It is important to mention that the distribution of coercivity can also be identified from a FORC diagram. dFORC application represents a tool to compute the FORC distribution from the specific experimental data. -
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Evidence bucket
A minimalist cross-platform transcription software
This project was moved to https://code.google.com/p/evidence-bucket/ -
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rTRM
Identification of transcriptional regulatory modules (TRMs)
This R package can be used to identify TRMs using experimental evidence from a single ChIP-seq experiment. It combines computational predicted transcription factor (TF) binding sites, gene expression and protein-protein interaction (PPI) data and use it to predict TRMs. -
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DAWGPAWS is a suite of command line programs written in Perl that accelerates annotation of genes and transposable elements in plant genomes by automating the process of running annotation programs and facilitating combined evidence annotation curation.
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CRIS-IE-Smoking
GATE based app to extract patient smoking status from free text
This application was developed by the NIHR Biomedical Research Centre at the Institute of Psychiatry and South London and Maudsley NHS Foundation Trust, in collaboration with the University of Sheffield. Its purpose is to identify the smoking status of a individual, based on text evidence in clinical notes. Currently, it classifies patients as 'current', 'past' or 'never'. It runs on the GATE infrastructure, available at http://gate.ac.uk/. Please contact richard.g.jackson@slam.nhs.uk for support/queries. -
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A java-based framework to determine file origins on a file system by accessing system and application logs and track the evidence trace through metadata.
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Clinical Evidence Detector
Detector of clinical evidence
This is a Python program based on the NegEx algorithm that detects the polarity of the clinical evidence in clinical random trials. If you use this code please cite this paper: P. Davis-Desmond and Diego Mollá. Detection of Evidence in Clinical Research Papers (2012). Australasian Workshop On Health Informatics and Knowledge Management (HIKM 2012), Melbourne, Australia. http://www.ics.mq.edu.au/~diego/publications/hikm12.pdf -
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GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.
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LCS is an evidence-based medicine library consult service web application designed to facilitate physicians' use of the research literature. Physicians submit clinical questions to the system, librarians respond, and physicians rate the responses.
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Evidence-based Guideline and Decision Support System. Provides patient specific point of care reminders in order to aid physicians provide high quality care. Input/output in the form of HL7 CDA Level 2 documents. Knowledge is encoded using Arden Syntax.
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BioEval, a web-based evaluation platform for one or multiple biomedical text extraction systems and the collaborative creation of gold standards. Handles evaluation of extraction of one to many related entities, plus supporting evidence and normalization
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