Search Results for "data extraction"
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Showing 53 open source projects for "data extraction"
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broom
Convert statistical analysis objects from R into tidy format
broom is part of the tidymodels ecosystem that converts statistical model outputs (e.g. from lm, glm, t.test, lme4, etc.) into tidy tibbles — standardized data frames — using functions tidy(), glance(), and augment(). These are easier to manipulate, visualize, and report programmatically. -
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Hyperspectral data analysis in R
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal. -
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LabPlot
Data Visualization and Analysis
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. -
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GeoDMA
Geographic feature extraction and data mining
GeoDMA is a plugin for TerraView software, used for geographical data mining. With a single image, the user can perform segmentation, attributes extraction, normalization and classification. -
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bmrblib
The BMRB library
Bmrblib is a Python API abstracting the Biological Magnetic Resonance Data Bank (BioMagResBank or BMRB) NMR-STAR format (http://www.bmrb.wisc.edu/). It allows the writing of NMR-STAR files for BMRB data deposition and the reading and easy extraction of data from files residing in the BMRB data bank, all without knowledge of the Self-Defining Text Archive and Retrieval (STAR) format. -
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Image16
Image viewer/editor specialized in astrophotography 16bits processing
...FFT contrasting/denoising. Uses Astrometry.net to platesolve images. Includes Bright Star Catalogue up to mag. 5 and Tycho 2 Catalogue up to mag. 12 allowing for Star B-V color data for color balancing plate solved images. Interfaces with ASCOM, G'MIC and Starnet++. Macros. EAA. Win>=7 and Linux+Wine>=7. -
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[ARCHIVAL] The central forum for the MWE community. Share your open-source data sets and MWE extraction tools, exchange ideas on evaluation strategies and further development of the tools, and discuss theoretical definitions and linguistic properties of MWEs.
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The auditory modeling toolbox (AMT) is a Matlab/Octave toolbox for the development and application of auditory computational models. Over 50 auditory models implemented in Matlab, Octave, C, C++, and Python can be run from Matlab and Octave, on Windows and Linux. The AMT provides a well-structured in-code documentation, includes auditory data required to run the models. It integrates functionality to reproduce the model predictions. Model implementations can be evaluated in two stages,...
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PoseidonQ - AI/ML Based QSAR Modeling
ML based QSAR Modelling And Translation of Model to Deployable WebApps
- This Software was made with an intention to make QSAR/QSPR development more efficient and reproducible. - Published in ACS, Journal of Chemical Information and Modeling . Link : https://pubs.acs.org/doi/10.1021/acs.jcim.4c02372 - Simple to use and no compromise on essential features necessary to make reliable QSAR models. - From Generating Reliable ML Based QSAR Models to Developing Your Own QSAR WebApp. For any feedback or queries, contact kabeermuzammil614@gmail.com - Available on... -
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JWST MIRI and NIRCam imaging Pipeline
creates seamless mosaics from multiple exposures.
Live https://huggingface.co/spaces/QCAUS/QCAUS Webb Space Telescope (JWST) MIRI and NIRCam imaging data. This tool handles background matching, cosmic ray rejection, and creates seamless mosaics from multiple exposures. Features Multi-instrument Support: Process both MIRI and NIRCam data Background Matching: Automatic background leveling across exposures Cosmic Ray Rejection: Advanced cosmic ray identification and removal Seamless Mosaicking: Create continuous field mosaics from dithered observations Source Extraction: Generate segmentation maps and source catalogs Calibration-ready: Works with JWST pipeline products (_cal.fits, _rate.fits) Memory Efficient: Handles large JWST datasets efficiently Installation Prerequisites Python 3.8 or higher JWST calibration pipeline 4GB+ RAM recommended for large mosaics -
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p3d
General data-reduction tool for fiber-fed integral-field spectrographs
p3d is a general data-reduction tool for use with fiber-fed integral-field spectrographs (IFSs); although, the spectrum viewer works with spectrum data cubes of any origin. The tool is built about the proprietary software IDL (Harris/EXELIS; see http://www.harrisgeospatial.com), but can be used without any license. Most slowly running loops are implemented in parallelized C (OpenMP). -
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OpenVigil
Open pharmacovigilance data extraction, mining and analysis tool
OpenVigil provides a webinterface to analyse pharmacovigilance data, i.e., spontanous or systematic collections of treatments (drugs) and observed adverse events ("drug side effects"). FDA Adverse Event Reporting System (AERS) and other pharmacovigilance data (e.g., Canadian or German) are supported. The OpenVigil web-based analysis tools offer several analysis modes like extraction, filtering, mining of data and analyses via measurements of disproportionality like proportional reporting ratio or reporting odds ratios) and export to spreadsheets programs like Microsoft Excel or statistics programs like R. ... -
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AICtools
Workflow and set of tools for Automated Imagery Classification
AICtools is a GIS workflow and set of tools to facilitate Automated Imagery Classification (AIC) and analysis of surface features over time. Allows bulk processing of large data sets, including automated metadata processing/filtering, compressed archive extraction and file manipulation, raster band compositing, pre-processing, mosaicking, clipping. Automates a subset of operations involved in classification of satellite imagery and the associated raster calculations used for time trend analysis. -
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MCNPydE
MCNP data extraction and display software library
MCNPydE is a Python library for extracting data from MCNP output file. It requires Python, Matplotlib and Numpy. It is a data reduction tool for MCNP output for ease of results analysis and viewing. -
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Phenalysis
Analyze agronomic plant research plots in aerial orthomosaic images.
A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on... -
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3DFOREST
tool for manage and process TLS lidar data from forest environment
Software tool for tree atributes extraction from point cloud data acquired by terrestrial laser scanner in forest enviroment. 3DForest is not only a visualizer af data but brings new and complex data management for foresters and researchers -
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JPIV
Particle Image Velocimetry
JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/ -
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Myo Mapper
An open-source software to map Myo data into OSC and MIDI messages.
MyoMapper, an open-source software to rescale and centre and map Myo data into OSC and MIDI messages. -
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Wandora is a general purpose information extraction, management, and publishing environment based on Topic Maps and Java. Wandora has several data storage options, rich data extraction, import and export capabilities and embedded server.
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Adele
Adhoc Data Exploration - Live & Easy
Adele was developed to simplify the daily work with data. Use it as a swiss knife to fill the gap between your work with spreadsheet application like MS Excel and enterprise servers like SAP ERP. Specialized tools like Rapid Miner, KNIME or similiary stuff should not be replaced. But Adele is designed for business people working with spreadsheet applications to analyse their data. There are many technical concepts in an easier way included. For example realtime OLAP, transformations,... -
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3DBrainExplorer is a lightweight OpenGL-based 3D renderer for scientific visualization of volumetric data (NIfTI) featuring real-time image manipulation, AAL brain labels (Tzourio-Mazoyer et al., 2002), SPM5 statistical images and stereo display.
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Accelerated Feature Extraction Tool
A fast GPU accelerated feature extraction software for speech analysis
A fast feature extraction software tool for speech analysis and processing. It incorporates standard MFCC, PLP, and TRAPS features. The tool is a specially designed to process very large audio data sets. It uses GPU acceleration if compatible GPU available (CUDA as weel as OpenCL, NVIDIA, AMD, and Intel GPUs are supported). CPU SSE intrinsic instruction set is used in cases where no compatible GPU present. -
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QuickNXS
Polarized ToF reflectivity raw data analysis tool
Data evaluation tool for the magnetism reflectometer at the spallation neutron source (BL-4A@SNS). Reads raw nexus files (HDF5) of histogrammed or event mode data to create reflectivity curves and 2D Q-maps. -
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SyntheticWSI
Tools to generate and visualize artificial whole slide images
Java 8+ required. Collection of tools to help generate artificial Whole Slide Images (WSIs). A WSI is stored as a ZIP archive of JPG tiles, and this software contains a tool to visualize this format. SVS files can be used directly for texture extraction (thanks to the included Bio-Formats library). Main source files in package fr.unistra.wsi.synthetic. -
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The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.
