Showing 12127 open source projects for "java open source"

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  • 1
    Arabidopsis Motif Scanner

    Arabidopsis Motif Scanner

    Scanner of cis-regulatory elements in Arabidopsis genome

    The major mechanism driving cellular differentiation and organism development is the regulation of gene expression. Cis-acting en-hancers and silencers appear to have key roles in regulating gene expression. Arabidopsis Motif Scanner was design to build gene networks by identifying the cis-regulatory elements position in the model plant Arabidopsis thaliana and by providing an easy interface to evaluate gene relations.
    Downloads: 2 This Week
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  • 2
    zamiaCAD is a modular and extensible platform for HW design, analysis, and research. It translates a HW description (VHDL or Verilog) into a language independent IG structure. Applications like a simulator and an eclipse GUI build on top of the IG.
    Downloads: 0 This Week
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  • 3

    Common Lisp Wrapper for Proj

    CFFI glue code to use Proj.4 library in Lisp

    CFFI glue and bindings for the Proj.4 library to provide a wealth of geographical projections in Common Lisp environment. PROJ.4 is a Cartographic Projections library originally written by Gerald Evenden then of the USGS. CL-PROJ provides complete bindings for this library.
    Downloads: 0 This Week
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  • 4
    Matlab Toolbox 'Measures of Effect Size'
    A set of Matlab functions which compute effect size statistics and (exact) confidence intervals for a wide range of data analysis situations, including two-sample-, oneway-, twoway- and contrast analyses as well as categorical data in tables.
    Downloads: 3 This Week
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  • Atera all-in-one platform IT management software with AI agents Icon
    Atera all-in-one platform IT management software with AI agents

    Ideal for internal IT departments or managed service providers (MSPs)

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  • 5
    Penobscot River RKM Calculator

    Penobscot River RKM Calculator

    Look up in river distances in the Penobscot River drainage.

    Allows user to input a .csv of UTM coordinates within the Penobscot River basin and calculates in-river distance (in kilometers) from the river's mouth to the locations of interest. The results are output into a new .csv file named yourfilename+RKM.csv. For the purposes of this calculator, river kilometer 0 is located at 516414E 4927755N in UTM Zone 19N, near the southwest corner of Verona Island. Simply download the setup file and run it to install the program. Please contact me with...
    Downloads: 0 This Week
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  • 6

    TransMatrix

    Matrix transformations

    Software modificable para transformar matrices de tres columnas [A (grupo 1), B (grupo 2) y C (conexiones entre nodos de ambos grupos)] a matrices completas y simétricas.
    Downloads: 0 This Week
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  • 7
    freedomotic

    freedomotic

    Open IoT Framework

    Freedomotic is an open source, flexible, secure Internet of Things (IoT) development framework, useful to build and manage modern smart spaces. It is targeted to private individuals (home automation) as well as business users (smart retail environments, ambient aware marketing, monitoring and analytics, etc). Freedomotic can interact with well known standard building automation protocols as well as with "do it yourself" solutions.
    Downloads: 0 This Week
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  • 8
    datasw

    datasw

    datasw, a tool for rapid processing of HPLC-SAXS data.

    Small-angle X-ray scattering (SAXS) in solution is a common low-resolution method which can efficiently complement high-resolution information obtained by crystallography or NMR. Sample monodispersity is key to reliable SAXS data interpretation and model building. Beamline setups with inline high-performance liquid chromatography (HPLC) are particularly useful for accurate profiling of heterogeneous samples. The program DATASW performs averaging of individual data frames from HPLC-SAXS...
    Downloads: 0 This Week
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  • 9
    Next-generation data pipeline to statistically call methylated and differentially methylated loci See the manual in doc/manual.pdf Please note: Calling of (differentially) methylated _positions_ will soon be uploaded.
    Downloads: 0 This Week
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  • Grafana: The open and composable observability platform Icon
    Grafana: The open and composable observability platform

    Faster answers, predictable costs, and no lock-in built by the team helping to make observability accessible to anyone.

    Grafana is the open source analytics & monitoring solution for every database.
    Learn More
  • 10
    Chebfun

    Chebfun

    Chebfun: numerical computing with functions

    Chebfun is a MATLAB-based system for numerical computing with functions instead of just numbers. It represents functions using Chebyshev polynomial approximations and allows users to perform operations like differentiation, integration, root finding, and solving ODEs using symbolic-like syntax. Chebfun simplifies working with continuous mathematics using high-accuracy numerical techniques.
    Downloads: 0 This Week
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  • 11

    PSIworx

    Data processing for the PSI fluorometer

    PSIworxR (R) and PSIworx (MATLAB) are a collection of functions and scripts to analyze data from the PSI SuperHead Fast Fluorometer series (www.psi.cz). These fluorometers are used in limnology and oceanography research communities. The program retrieves parameters from single turnover induction and relaxation. Results are returned as text files and PDF figures.
    Downloads: 0 This Week
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  • 12
    FreeMat
    Freemat is an interpreted, matrix-oriented development environment for engineering and scientific applications, similar to the commercial package MATLAB. Freemat provides visualization, image manipulation, and plotting as well as parallel programming.
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    Downloads: 251 This Week
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  • 13
    Scripted Roulette

    Scripted Roulette

    Simulation tool for the casino game Roulette

    Scripted Roulette is an original application which helps you to develop and analyze new betting strategies for the casino game Roulette. Learn and understand more about the chances you really have to win.
    Downloads: 2 This Week
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  • 14
    BioFVM

    BioFVM

    3-D diffusion solver for biological problems

    BioFVM is an open source diffusive transport solver for biological problems. It can solve for the diffusion of tens or hundreds of substrates on large 3-D domains. For simplicity, the code has minimal external dependencies. BioFVM was first published in: A. Ghaffarizadeh, S.H. Friedman, and P. Macklin. BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations.
    Downloads: 0 This Week
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  • 15
    composight
    Composight is a cross-platform toolkit for 3D-image processing in the domain of composite materials science. It is written in C++ and provides small, problem-specific applications for viewing, filtering and segmentation of volumetric data such as micro-CT scans. The main objective is not to provide yet another complex application for volume data visualization and medical image processing. Instead, Composight is a collection of small and simple apps that have already been successfully used to...
    Downloads: 0 This Week
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  • 16
    Blivion

    Blivion

    Blivion: BioLayer Interferometry Virus On (only)

    Blivion is a software tool for analysing biolayer interferometry measurements of the binding of large vesicles such as influenza virus onto a two-dimensional ligand-coated substrate.
    Downloads: 0 This Week
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  • 17
    Easy-to-use Reverse Polish Notation (RPN) Java Library.
    Downloads: 0 This Week
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  • 18
    MYRA

    MYRA

    A collection of ACO algorithms for the data mining classification task

    MYRA is a collection of Ant Colony Optimization (ACO) algorithms for the data mining classification task. It includes popular rule induction and decision tree induction algorithms. The algorithms are ready to be used from the command line or can be easily called from your own Java code. They are build using a modular architecture, so they can be easily extended to incorporate different procedures and/or use different parameter values. This project is now hosted at: https://github.com/febo/myra
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    Downloads: 61 This Week
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  • 19
    Jillion
    Java bio-informatics library to analyze and convert genomic sequence and assembly data. This library was created and used by the J. Craig Venter Institute (JCVI)
    Downloads: 0 This Week
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  • 20
    C++ Standard Airline IT Object Library
    That project aims at providing a clean API, and the corresponding C++ implementation, for the basis of Airline IT Business Object Model (BOM), ie, to be used by several other Open Source projects, such as RMOL, Air-Sched, Travel-CCM, OpenTREP, etc.
    Downloads: 0 This Week
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  • 21
    jalicanto

    jalicanto

    Traveling Salesman Problem "window time based" aproximate solver

    Time based Traveling salesman problem solver. Using iterated local search algorithm, implements xkick perturbation Programmed in Java. A class to use the TSP Suite(Thomas Weise, Raymond Chiong, J ¨org L¨assig, Ke Tang, Shigeyoshi Tsutsui, Wenxiang Chen, Zbigniew Michalewicz, Xin Yao, Benchmarking Optimization Algorithms: An Open Source Framework for the Traveling Salesman Problem. 2014.),is implemented.
    Downloads: 0 This Week
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  • 22
    PRINSOW

    PRINSOW

    STL viewer for 3D printing

    Free Open Source STL viewer (GNU GPL / No installation required) by El mehdi Abbou-ou-cherif. -------------------------------------------------------------------------- PRINSOW provides minimalistic but yet important features as given below. It is heavily based on VTK 6.1 and Qt 5.4.1 libraries. It is the first author contribution in the field of free software so any comment is welcomed. -------------------------------------------------------------------------- P.S. ...
    Downloads: 0 This Week
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  • 23
    JAWS - Just Another Web Scraper

    JAWS - Just Another Web Scraper

    A simple Web Scraper using Regular Expression or Html Agility

    JAWS or Just Another Web Scraper, is part of the Data Scraping Softwares developed by SVbook, alongside JATI (Image to Text) and JAVT (Video to Text). JAWS offer easy interface to scrape data from the website using regular expression, text preprocessing, or HTML Agility Pack.
    Downloads: 0 This Week
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  • 24

    TX-TL modeling toolbox

    Modeling and analysis tools for the TX-TL cell-free expression system

    This project contains tools for using the TX-TL cell-free expression system. These tools include component models for simulating and analyzing biomolecular circuits, as well tools for composing circuits and creating more complex systems. NOTE: This project has been shifted to GitHub: https://github.com/BuildACell/txtlsim
    Downloads: 0 This Week
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  • 25
    DataCleaner

    DataCleaner

    Data quality analysis, profiling, cleansing, duplicate detection +more

    DataCleaner is a data quality analysis application and a solution platform for DQ solutions. It's core is a strong data profiling engine, which is extensible and thereby adds data cleansing, transformations, enrichment, deduplication, matching and merging. Website: http://datacleaner.github.io
    Downloads: 3 This Week
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