Search Results for "opensource java code" - Page 7
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Showing 369 open source projects for "opensource java code"
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IQuant
A pipeline for quantitative proteomics based upon isobaric tags
IQuant is an automated pipeline for quantitative proteomics based upon isobaric tags. It integrates post-processing tool of protein identification and advanced statistical algorithms to process the MS/MS signals generated from the peptides labeled by isobaric tags for quantification. IQuant can run from a graphical user interface (GUI) as well as a command-line interface and work with both Windows and Linux system. This website contains the IQuant software, an example data labeled by... -
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RFXCAM
A CAD/CAM Package for CNC GCode Creation
RFXCAM is an opensource CAD / CAM package targeted at CNC machines (Mills, routers...). The idea is to create the basic interface for geometry manipulation and toolpath creation. Heavy python plugin support will allow a future community to create a vast selection of unique plugins for added functionality specific to their needs. Tutorial 1: https://www.youtube.com/watch?v=bNvE2H8b6Yc&feature=youtu.be -
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The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.
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Graphical Grammar Studio
An user friendly grammar tool for natural language processing tasks
Full documentation with tutorials is included in the download package. Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. A grammar is represented by a state machine which can be visualized, edited... -
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NLFormatter
Tool to format NetLogo code
***** Discontinued (may still work but will not be updated and supported anymore) ***** This formats NetLogo code that every block of code is written in a separate line. This makes the code clearer and is a pre-work for a Pseudo-Debugger running the model line-by-line. This work is in development status. -
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Open HLA (oh-la) provides an open-source implementation of the HLA RTI spec 1.3, IEEE 1516 and IEEE 1516 Evolved. It also provides a framework to wrap the standard RTI classes and FOM to code generation to make life simpler.
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JCycles
[frozen] A library for computing cycles in graphs or in Java code.
[This project is frozen, but has an offspring with more features: https://github.com/jeffhain/jadecy ] JCycles provides treatments to compute cycles, or just strongly connected components, in directed graphs in general, or in classes or packages dependencies graphs parsed from class files (major version <= 51, else does best effort). It uses Tarjan's algorithm for SCCs, and Johnson's for cycles, with continuations instead of recursion, which allows to handle large graphs (<... -
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JinnIde is a plugin that allows using Jinni Prolog, now also hosted here on this site (with open source license!), within the confines of an IDE integrated in JEdit.
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Japrosim is a java library for both discrete event and continuous simulation. GUI for modeling and automatic code generation are offered. An explanation module is integrated. Models are described in XML and owl for interoperability.
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This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file conversion.
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jk3d is a java code for 3d interpolation of scattered data. jk3d uses a quality weighted ordinary Kriging method and optional an inverse distances weighting method. It has no graphical user interface and uses ASCII files to define the input.
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VOpR
VOpR - a virtual optical rail
...The virtual optical rail as a ray-tracing simulation of the optical system. The goal is to provide fast and useful diagnostic images, not realistic blur. Additionally there is full access to the java source code under the terms of the GPLv3. -
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OOBD supports a self-programable Tool for Vehicle Onboard Diagnostics (OBD) for various platforms like the Windows-Desktop, mobile Phones and Smartphones Please note that we are actual moving this project over to oobd.googlecode.com. The software source code repository is already moved, other areas will follow.
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NN Image Recognition (with source-code)
This is ANN trained application to predict digits from 0 - 9.
It can predict digits from 0-9 with Artificial Neural Network. I trained ANN with 100 samples of each digit. It takes input of 20x20 pixel image and predicts it with Neural Network. It may predict wrong digit due to very low sample data but it work 90% correctly. Note: JRE 1.6 is required to run this application. -
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GISBox by Citiviz
Ready-to-use appliance for GIS, Data Mining and Analysis, Modelling...
GISBox by Citiviz is a ready-to-use virtual appliance containing an assortment of powerful, free and open source GIS, Data Mining and Analysis, Modelling and Programming software and packages. The pre-configured and tested GISBox allows you to try and use in few minutes a variety of software used by data scientists, engineers, physicists, mathematicians, geomatics engineers, and geographers from around the globe, without installing anything more than once the Oracle VirtualBox™ software... -
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TML - Text Mining Library for LSA & CMM
TML is a Java Library for LSA and extracting Concept Maps from text
TML has moved to http://www.villalon.cl/tml.html and the code to https://github.com/villalon/tml -
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Javafastcomplex
Javafastcomplex has both mutable and immutable complex numbers
Javafastcomplex is a fast complex number package for Java. Most existing complex number packages implement only immutable complex numbers, which is easy to understand given that immutable objects lead to more understandable code. Mutable complex numbers would avoid garbage-collection penalty and therefore be faster in calculations. Javafastcomplex implements both mutable and immutable complex numbers, and has a common interface for both, allowing users to write functions that can take either a mutable or an immutable complex number as an argument. ... -
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TikiOne JaCoCoverage
Java (6&7) Code Coverage Plugin for NetBeans, based on JaCoCo
NetBeans module that provides JaCoCo code coverage (Java7 compatible). For Ant based JavaSE projects. Maven and Gradle support may be added later. WARNING: Binary files have been removed. They're now on a NetBeans update center. Please check https://github.com/jonathanlermitage/tikione-jacocoverage#download-stable-and-dev-builds for details. ~Jonathan Lermitage <jonathan.lermitage@gmail.com> -
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drl2g
Convert drl files to g code
This is a utility to process and convert drl files to efficient g code, which will help in drilling PCBs using a CNC. The snapshots are based on the linuxcnc axis program to visualize the results of the program using different algorithms. -
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A collection of Java ports of open source terrain and solar system generation packages. Code has been extensively refactored, extended and documented. GPL License with exception for required libraries.
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A high-performance implementation of the BACnet I/P and MS/TP protocol written for Java (minimum version 1.5) by Infinite Automation Systems. Supports all BACnet services and full message segregation. Can be used for field devices or for control platforms. For commercial licenses contact https://infiniteautomation.com/bacnet4j-open-source-bacnet-library/ The most recent code is here: https://github.com/infiniteautomation/BACnet4J For support see: https://forum.infiniteautomation.com/category/12/bacnet4j-general-discussion
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javadbchem
A universal chemistry database system, using Java and any rdbms
This projects provides a mechanism which saves chemical structures to a rdbms. Everything is written in Java and is independent from the rdbms used (first tested system is mysql, tweaking might be needed for others). The chemistry is handled using Chemistry Development Kit, this is proven code. The system holds atoms and bonds as entities in the rdbms, this makes it possible to have properties recorded using foreign keys and referential integrity. -
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The Java RTree project aims to maintain an Java version of the RTree spatial indexing algorithm. See http://jsi.sourceforge.net for more information, and http://github.com/aled/jsi for latest development code.
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Octclipse
Octave Eclipse GUI
Octave development environment built upon Eclipse's Dynamic Languages Toolkit (http://www.eclipse.org/dltk/). Distributed as an Update site for Eclipse 3.7 Indigo and Indigo-based package for several platforms. Supports search, autocompletion, launching scripts, interactive console, debug and integrated plotting on Octave versions 3.2.x, 3.4.x and 3.6.x. The current goal is to make it running out-of-box on multiple platforms. Currently only Linux and Windows are supported. Mac... -
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MathParser Java - Math Parser library
Mathematical Parser for Java
This project gives a mathematical parser for converting a simple string expression into a result which can be managed for using in other calculations, all in Java. Using a couple lines of code, you'll be able to parse complex arithmetic expressions efficiently. This library is powered by Dijkstra's Shuting-yard algorithm. The library has no dependencies with other external libraries. Dependency <dependency> <groupId>com.google.code.mathparser-java</groupId> <artifactId>mathparser-java</artifactId> <version>1.0.0</version> </dependency> Expressions supported (Mar/09/2013) - Arithmetic operations. ...
