Showing 12128 open source projects for "java open source"

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  • 1
    A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.
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    Downloads: 195 This Week
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  • 2
    ScaffCC

    ScaffCC

    Compilation and optimization framework for the Scaffold language

    ScaffCC is a compiler and scheduler for the Scaffold programing language. It is written using the LLVM open-source infrastructure. It is for the purpose of writing and analyzing code for quantum computing applications. ScaffCC enables researchers to compile quantum applications written in Scaffold to a low-level quantum assembly format (QASM), apply error correction, and generate time and area metrics. It is written to be scalable up to problem sizes in which quantum algorithms outperform classical ones, and as such provide valuable insight into the overheads involved and possible optimizations for a realistic implementation on a future device technology.
    Downloads: 0 This Week
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  • 3
    MGFVisor

    MGFVisor

    Visor for mass spectrometry MGF files

    Visor for mass spectrometry MGF files (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/mgfvisor3/code/ci/default/tree/README.md
    Downloads: 0 This Week
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  • 4
    Python4Proteomics Course

    Python4Proteomics Course

    Python course for Proteomics analysis

    Python course (in Spanish) for Proteomics analysis using basically Jupyter NoteBooks. For more information, you can have a look at the readme.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/p4p/code/ci/default/tree/readme.md
    Downloads: 1 This Week
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  • 5
    EasierMGF

    EasierMGF

    Converts RAW Thermo Files into MGF files

    Converts RAW Thermo Files into MGF files (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/easiermgf3/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124
    Downloads: 0 This Week
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  • 6
    OmssaGUI

    OmssaGUI

    GUI front-end for OMSSA

    GUI front-end for the OMSSA proteomics search engine. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/omssagui/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124
    Downloads: 0 This Week
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  • 7
    SequestGUI

    SequestGUI

    GUI front-end to sequest.exe

    GUI front-end to sequest.exe proteomics search engine, developed in Perl. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/sequestgui/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124
    Downloads: 0 This Week
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  • 8

    FastaTools

    Performs several operations to Fasta protein databases

    ...A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124
    Downloads: 0 This Week
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  • 9
    Strukturformel-Zeichner

    Strukturformel-Zeichner

    A Tool to draw carbon compounds based on the IUPAC-description

    Downloads: 0 This Week
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  • 10
    xMariner

    xMariner

    xMariner automates the analysis of MALDI spectra and report generation

    xMariner automates the analysis of MALDI spectra and report generation
    Downloads: 0 This Week
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  • 11
    TagCalc

    TagCalc

    Calculates groups of aminoacids that adjust to a mass difference

    Calculates groups of amino-acids that adjust to a mass difference (Python 3 version).
    Downloads: 0 This Week
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  • 12
    Xtraq

    Xtraq

    Xtraq extracts iTRAQ data from .ANZ Peaks results files

    Xtraq extracts iTRAQ data from .ANZ Peaks results files.
    Downloads: 0 This Week
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  • 13

    Time Ephemerides

    Calculate time ephemerides in convenient form

    Project to calculate and distribute the general relativistic corrections to clock rates for the surfaces of various solar system bodies. These corrections are also known as time ephemerides.
    Downloads: 1 This Week
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  • 14
    HL7 Inspector

    HL7 Inspector

    HL7 Inspector is a tool for managing HL7 messages

    The HL7 Inspector project has moved to Bitbucket. https://bitbucket.org/crambow/hl7inspector All new releases can be found there. The web-based version can still be found at www.hl7inspector.com
    Downloads: 12 This Week
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  • 15
    NumericalChameleon

    NumericalChameleon

    a free cross platform precise unit converter, supports 6000+ units

    The NumericalChameleon is a free, open source, cross platform software in order to convert units. It converts numbers with a precision of up to 1000 significant figures. It supports more than 6000 units in 94 categories. It has been localized in 10 languages.
    Downloads: 14 This Week
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  • 16
    KimPeptid

    KimPeptid

    Analyzes Peptides Properties (Python 3 version)

    Analyzes Peptides Properties (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/kimpeptid3/code/ci/default/tree/README.md
    Downloads: 0 This Week
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  • 17

    yad2xx

    Yet Another JNI-D2XX Interface Project

    A Java Native Interface (JNI) library suitable for communicating with a range of USB interface chips from FTDI via the D2XX driver. It currently supports OS X 10.10+ and Windows 7/8 x64. On OS X, the 64 bit JVM is supported. On Windows, support is limited to the 64 bit JVM (Java 1.8 is now 64 bit). Version 1.0 --------------------------------- - Java 8 - SPI support and sample (via MPSSE)
    Downloads: 2 This Week
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  • 18
    This project is moved to github: https://github.com/sokirko74/aot
    Downloads: 0 This Week
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  • 19
    LymPHOS2

    LymPHOS2

    LymPHOS2 Web-App

    ...DOI: 10.1021/pr800500r - Ovelleiro, D., Carrascal, M., Casas, V., Abian, J., LymPHOS: design of a phosphosite database of primary human T cells. Proteomics 2009, 9, 3741–3751. DOI: 10.1002/pmic.200800701 - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., Abian, J., A collection of open source applications for mass spectrometry data mining. Proteomics 2014, 20, 2275-2279. DOI: 10.1002/pmic.20140012
    Downloads: 0 This Week
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  • 20
    Cppfunct implements run-time C++ function objects, with creation, invocation, manipulation, and combination. The function object concept abstracts ways to parameterise other classes beyond simple static values.
    Downloads: 0 This Week
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  • 21
    Tux Math Scrabble

    Tux Math Scrabble

    12÷16×3=9÷4

    Latest version 0.9.1 runs on Python3. Date: June 15, 2023 Online/touch-screen version: https://www.asymptopia.com/tuxmathscrabble Encourages kids to construct compound equations and consider multiple abstract possibilities.
    Downloads: 3 This Week
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  • 22
    ZanyBlue
    ZanyBlue: Ada libraries towards a finite element framework
    Downloads: 2 This Week
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  • 23
    Distributed Generic Information Retrieval (DiGIR) - developing and testing a protocol for single point access to distributed data sources. Based on HTTP, XML, and UDDI.
    Downloads: 0 This Week
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  • 24
    The latest ESMF development is happening in GitHub: https://github.com/esmf-org/esmf https://earthsystemmodeling.org The Earth System Modeling Framework provides high-performance software infrastructure and superstructure for the construction and coupling of climate, weather, and data assimilation applications.
    Downloads: 3 This Week
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  • 25
    KLatexFormula
    KLatexFormula is an easy-to-use graphical application for generating images (that you can drag and drop, copy and paste or save to disk) from LaTeX equations.
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    Downloads: 124 This Week
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