Search Results for "python windows" - Page 40
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Showing 1904 open source projects for "python windows"
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CoNIFER
Homepage for CoNIFER (Copy Number Inference From Exome Reads)
CoNIFER uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes. -
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colonyzer image analysis software
Image analysis estimating cell density in arrayed microbial cultures
Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and... -
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Prediction of MHC class I- and MHC class II-restricted T-cell epitopes. Prediction of proteasomal/immunoproteasomal processing of antigens. Prediction of peptide-TAP binding.
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ProSym
Software package that facilitates traffic simulation
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Function Calculator
Calculate some BASIC mathematical function
Calculate some BASIC mathematical function You can browse the source at: https://github.com/TheNiceGuy/FunctionCalculator -
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WxGeometrie
Le couteau-suisse du prof de maths
Calculatrice graphique en français, destinée aux professeurs ou aux étudiants du collège et du lycée. Elle permet de faire du calcul formel, de tracer des courbes et des figures géométriques exportables en png, eps ou svg. Linux, Windows... Cette version n'est plus maintenue. Nous vous recommandons d'utiliser désormais la nouvelle version, nommée Géophar : http://sourceforge.net/projects/geophar -
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Standalone application that uses the clipboard to insert a tag in any document and/or in a log file. Tags contain context information (e.g., date, author) + text note, picture or webcam shot. Tags can contain variables generated by user and/or external programs.
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Pysimony
A Pythonic Implementation of Parsimony Inference of Phylogeny
UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An... -
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A PHP script with maps of the World, China, Canada, USA, India, Africa and Europe that allows the user to select the countries, provinces or states by clicking on them or selecting a checkboxes. Selection causes the entity to turn a default color which contrasts with defaults colors of all bordering countries. Thus a patchwork is made to show the history of countries, states or provinces traveled. Added features allow users to download their maps, to blow them up to posters of any...
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pylabrad development has moved to GitHub: https://github.com/labrad/pylabrad Packages are distributed through PyPI: https://pypi.python.org/pypi/pylabrad
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pyscope
Software oscilloscope using Python and tkinter
Software oscilloscope using Python and tkinter. Supports multiple sources: socket, file, audio, USB. Displays data by samples, time or frequency. Scales the input automatically or manually. It has been renamed "pdatascope" to avoid a name-clash with Pyscope, a scoping package on PyPi. See https://sourceforge.net/p/pydatascope/ for the latest code. -
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GraVol
Drawing-based volume calculator. GraVol=Graph Volume
GraVol is designed to aid archaeologists in calculating the volume of any revolved container, such as wheel-thrown pottery. It does this using only a drawing of the vessel, and a height or diameter measurement. Instruction video: http://www.youtube.com/watch?v=pC8VReY83q4 Documentation of development: faculty.berea.edu/pearcej/CSC493/projects-11/jonestra-final.pdf -
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u/sbmv2012
Taxonomy assignment of metazoans using a python based pipeline
The aim of this project is to create an automated pipeline for taxonomic assignment of DNA sequences obtained from environmental samples. We develop a series of python scripts to process the raw sequence data obtained from benthic environmental samples and to taxonomical assignment of these sequences and finally to integrate all data in a relational database. -
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BikeVE
A tool for estimating CdA and Crr from Garmin .tcx files.
A tool for estimating CdA and Crr from Garmin .tcx files. -
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Mathemapy
A Python calculator program
Mathemapy is a feature-rich calculator made in Python. It can do multiple types of division, solve equations, expand equations and more. -
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GemSIM is a software package for generating realistic simulated next-generation sequencing reads with quality score values. Both Illumina and Roche/454 reads (single or paired end) can be simulated using appropriate empirical error models.
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Primer Design Tool
Design PCR primers
A simple tool to design DNA primers for mutagenesis in BGME lab (JHU). Allows users to select or enter background sequence and add current and new mutations. During the design process, users are presented with various updating checks to guide them. -
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JBoost is a simple, robust system for classification. JBoost contains implementations of several boosting algorithms in an alternating decision tree framework. In addition, JBoost provides extensible software for adding more learning algorithms.
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brocc
BLAST Read and OTU Consensus Classifier
NOW HOSTED ON GITHUB: https://github.com/kylebittinger/brocc Old releases are kept here for archival purposes. -
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Electrophysiology & circular stats tools
Data analysis and circular statistics with OpenElectrophy and R
Set of tools for basic analysis of electrophysiological data. The Python classes show how to call OpenElectrophy functions and save data. The R library applies circular statistics to spike phase data and saves the best von Mises fit and the Rayleigh statistics on the disk. The wavelet coherence analysis is done in R by the package "sowas". Check the module R_coherence to see how we solved that problem. This packages may be useful for people who start using OpenElectrophy and circular... -
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Statistical models with python using numpy and scipy. Currently covers linear regression (with ordinary, generalized and weighted least squares), robust linear regression, and generalized linear model, discrete models, time series analysis and other statistical methods.
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HOPSA, high oxygen pressure sputter automation, is a Python 3 project to control a step wise sample creation Process. Although written for this specific task it is easy to adopt for any experimental task which changes hardware parameters and waits for a specific condition before proceeding. The graphical interface (QT4) includes plotting (matplotlib), instrument configuration/monitoring and a program step creator. The communication with the hardware is independent of the GUI and any number...
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Open Exchange (OpEx)
The open source Algorithmic Trading System
OpEx is an application suite that includes the main building blocks of commercial electronic trading systems. All OpEx applications run on distributed system architectures. -
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OPyCua
OPC UA communication stack written in python
The goal of this project is to implement an OPC UA communication stack using the python programming language. Currently we are working on a series of articles, describing how we can use python to implement the communication stack. Some code snippets have already been written! -
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Redundancy due to cut-paste operations in text creates bias in machine learning for NLP. This module takes a directory and produces a subset of the files in that directory (in a list) with an upper bound on similarity between two files.
