Search Results for "image analysis algorithm" - Page 3
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Showing 278 open source projects for "image analysis algorithm"
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Novembre
STM data analysis
A tool for visualisation and analysis of STM and STS results. Currently supports RHK, WinSPM, Nanonis and Createc file formats. Other formats can be added. Tools are made available by plugins and are currently focused on spectroscopy manipulation. -
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MIPPY
Modular Image Processing in Python
MIPPY is a minimalistic DICOM image browser with built-in image processing modules. Its modular design means it can be extended with any number of user-created modules for image processing and analysis. -
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The main purpose of CombiTagger is to read files generated by individual PoS taggers and use them to develop and evaluate combined taggers according to a given combination algorithm. http://aaai.org/ocs/index.php/FLAIRS/2009/paper/download/67/296
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Brain imaging software produced by the Brain Research Imaging Centre of The University of Edinburgh.
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JPIV
Particle Image Velocimetry
JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/ -
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D_2D and D_3D are plotting programs with unique features, useful for data visualization and analysis. Input data should be provided as ASCII files formatted as x,y pairs or x,y,z triplets. Graphic output can be in DXF vector format, or raster image.
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TOFSIMS
R/Bioconductor toolkit for mass spectrometry data
...It also interoperates with Bioconductor’s imaging stack (e.g. EBImage) so users can apply segmentation and image analysis operations on mass images. -
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UmUTracker
A MATLAB program for 2D particle tracking or 3D DHM based tracking.
We present a versatile and fast MATLAB program (UmUTracker) that automatically detects and tracks particles by analyzing long video sequences acquired by either light microscopy or digital holography microscopy (DHM). Our program finds the 2D particle center position using an isosceles triangle transform and the axial position by a fast implementation of Rayleigh-Sommerfeld numerical reconstruction algorithm using a one dimensional radial intensity profile. *Updates v1.1: 2017/11/21- Bug... -
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AI learning
AiLearning, data analysis plus machine learning practice
We actively respond to the Research Open Source Initiative (DOCX) . Open source today is not just open source, but datasets, models, tutorials, and experimental records. We are also exploring other categories of open source solutions and protocols. I hope you will understand this initiative, combine this initiative with your own interests, and do what you can. Everyone's tiny contributions, together, are the entire open source ecosystem. We are iBooker, a large open-source community,... -
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CognitionMaster
object-based image analysis framework
Wienert S, Heim D, Kotani M, Lindequist B, Stenzinger A, Ishii M, Hufnagl P, Beil M, Dietel M, Denkert C, Klauschen F. CognitionMaster: an object-based image analysis framework. Diagn Pathol 2013, 8:34 -
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IQM-Plugin-PPI
PPI Index
This is an IQM plugin to compute the PPI index for binary digital images. This index represents the compactness of an object. PPI is computed with the FFI index and the Lacunarity using the ToW algorithm: PPI = FFI^(Ltw) For FFI, please see: https://sourceforge.net/projects/iqm-plugin-ffi/ Andronache etal. Fractal analysis for studying the evolution of forests, Chaos, Solitons & Fractals, 2016, Vol 91, 310-318. For Tug of War Lacunarity, please see: Reiss, Lemmerer, Hanslmeier, Ahammer Tug-of-War Lacunarity-A Novel Approach for Estimating Lacunarity. ... -
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PyVE
PyVE is image analysis and visualization environment
PyVE is image analysis and Visualization Environment focused at clinical use. At the core of it there is a powerful viewer for displaying 3D datasets (MRI, PET, CT) based on VTK. It all comes precompiled allowing painless access to Python (2.x), the ITK toolkit for image analysis, numpy/scipy for numerical calculations, Qt and PyQt4 for the development Graphical User Interfaces. -
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Accord.NET Framework
Scientific computing, machine learning and computer vision for .NET
The Accord.NET Framework provides machine learning, mathematics, statistics, computer vision, computer audition, and several scientific computing related methods and techniques to .NET. The project is compatible with the .NET Framework. NET Standard, .NET Core, and Mono. -
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Qu is a MATLAB toolbox for the visualization and analysis of N-dimensional datasets targeted to the field of biomedical imaging. It supports several microscopy image formats and offers a plugin mechanism and a consistent API for easy extension.
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Freemat is an interpreted, matrix-oriented development environment for engineering and scientific applications, similar to the commercial package MATLAB. Freemat provides visualization, image manipulation, and plotting as well as parallel programming.
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JAWS - Just Another Web Scraper
A simple Web Scraper using Regular Expression or Html Agility
JAWS or Just Another Web Scraper, is part of the Data Scraping Softwares developed by SVbook, alongside JATI (Image to Text) and JAVT (Video to Text). JAWS offer easy interface to scrape data from the website using regular expression, text preprocessing, or HTML Agility Pack. -
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sdmixer
A tool for 2D/ 3D multi-color super resolution microscopy
The open source software sdmixer reconstructs a TIFF image from a single molecule localization data set. The spectral demixing option allows multi color super resolution microscopy. sdmixer supports multipage TIFF images and is able to process large 3D data sets. Further features are 2D/3D convolution, histogram based contrast enhancement and nearest neighbor analysis. -
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FormRead
Free OMR - OCR web sofware based on javascript and PHP
https://formread.org FormRead is a completely free OMR (optical mark recognition) web software for scanning and grading user-filled, multiple choice forms. Create your formats with any of your office or drawing tools, scan them and parameterize their coordinates in an easy way. Once you have parameterized your form, you can print many of them, give it to your students/respondents, scan and recognize them with formread, and you can finally export the data in your preferred formats... -
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TESTIMAGES
Testing images for scientific purposes
...Please cite the following papers when using any image in this archive: * ASUNI N, GIACHETTI A, "TESTIMAGES: A Large Data Archive For Display and Algorithm Testing", Journal of Graphics Tools, Volume 17, Issue 4, 2015, pages 113-125, DOI:10.1080/2165347X.2015.1024298 * ASUNI N, GIACHETTI A, "TESTIMAGES: a large-scale archive for testing visual devices and basic image processing algorithms", STAG - Smart Tools & Apps for Graphics Conference, 2014. -
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This package includes a collection of MATLAB files which are designed to: 1. Given a calibration scan of the image of a point emitter with an engineered point spread function (PSF), 2. Perform a phase retrieval algorithm based on maximum likelihood estimation (MLE) of a phase aberration term which is added to the theoretical pupil function of the imaging system. 3. Use the phase-retrieved pupil function to perform single-emitter localization.
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ImagingAnalysis
Direct tissue-level image quantification package for Mathematica
ImagingAnalysis is a Mathematica package that performs grid-based analysis of time-lapse imaging data saved in a sequence of TIFF files. This package requires Mathematica 7.0. Revised on 14 May 2017: Bugs are fixed and incompatibility issues are resolved. The current version runs on Mathematica 11. -
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SUPERmerge
ChIP-seq coverage island analysis algorithm for broad histone marks
SUPERmerge is a ChIP-seq read pileup analysis and annotation algorithm for investigating alignment (BAM) files of diffuse histone modification ChIP-seq datasets with broad chromatin domains at a single base pair resolution level. SUPERmerge allows flexible regulation of a variety of read pileup parameters, thereby revealing how read islands aggregate into areas of coverage across the genome and what annotation features they map to within individual biological replicates. ... -
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RTToolbox
Library to support quantitative analysis of radiotherapy data
Moved to: http://github.com/MIC-DKFZ/RTTB RTToolbox is a software library, developed at the DKFZ to support quantitative analysis of treatment outcome for radiotherapy. The RTToolbox was designed following object-oriented design principles and was implemented in the language C++. It supports the import of radiotherapy data (e.g. dose distributions and structure sets) from DICOM-RT format and other standard image processing formats by using a bridge to ITK. -
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Marvin is an image processing framework that provides features for image and video frame manipulation, multithreading image processing, image filtering and analysis, unit testing, performance analysis and addition of new features via plug-in.
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MRiLab
A Numerical MRI Simulation Platform
The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time...
