Search Results for "sql command line" - Page 24
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Showing 1675 open source projects for "sql command line"
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modDFS
Find whether a KEGG module is complete in a proteome
Given module definitions and reaction information based on a KEGG database, modDFS does a depth first search to find whether a set of KOs are sufficient for completion of a module. For cases where only 1 absent KO would've been enough for module completion, that module is reported to be complete(only lenient). For cyclic modules, completion is defined as having all the module reaction steps present. Again, lenient completion cases are reported. Also, all absent reactions are reported so that... -
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A programmable signal generator and RF synthesizer for scientific experiments, especially quantum computing and quantum information processing. It includes hardware, firmware, software, and documentation, all under an open source license.
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SWP Project
SWP is for Weighted Points
SWP is a script language to manipulate sets of isolated weighted point, mainly analysis of fractal and other statistical properties of such sets. Originally started as a tool to explore fractal properties of cosmic fractal like large-scale distribution of galaxies. Could be used for any similar sets either. -
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IQuant
A pipeline for quantitative proteomics based upon isobaric tags
...It integrates post-processing tool of protein identification and advanced statistical algorithms to process the MS/MS signals generated from the peptides labeled by isobaric tags for quantification. IQuant can run from a graphical user interface (GUI) as well as a command-line interface and work with both Windows and Linux system. This website contains the IQuant software, an example data labeled by iTRAQ-8plex for testing and a user's manual. If you have any question about IQuant, please contact me: wenbo@genomics.cn. The source code of IQuant can be found here "https://sourceforge.net/p/iquant/code/". -
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A Scalable Multicore Code for RNA Secondary Structure Prediction
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Tab2MAGE uses a flexible spreadsheet format for MIAME annotation of microarray experiments. Tab2MAGE spreadsheets may be submitted directly to ArrayExpress, or used to generate MAGE-ML for data exchange.
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Graph-RAT is a database abstraction layer designed to make it easy to use a large library of graph-analysis routines on a database as well as add new kinds of algorithms to data mining.
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The MAGE-TAB Utilities project provides a simple Perl SDK for parsing, manipulating, visualizing and exporting data in MAGE-TAB format. All file releases are now being made via CPAN.
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KeplerDB
Timeseries databases management system
KeplerDB is a temporal database to store time/value entries where the type of value could be integer, float/double, boolean and string. KeplerDB is dedicated to be scalable and to create clusters of server allowing the user to analyse and store massing amount of data to monitor systems like computers, clusters, building and captors or financial systems like markets and accounts. The user can use KeplerDB to make data analysis on enormous amount of data (statistics and modelling). -
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PatchCatcher
Software for Patchwriting Detection
PatchCatcher uses suffix arrays to detect common types of patchwriting among scientific papers. -
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dl141th
Configure / read out the DL-141TH data logger
The DL-141TH temperature/humidity data logger comes with a proprietary software which has a quite large footprint and is only available for Windows, but not for Linux. This project provides - a description of the USB/serial protocol - a python script to configure / read out the DL-141TH data logger which can be used at least from Windows and Linux -
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Average
Command-line calculator of basic statistics.
Average is a simple and fast command-line Perl utility for calculating basic statistics on a list of numbers (one number per line). It works as a traditional Unix filter and can be used as part of those greatly useful chains of piped commands. It calculates average (arithmetic mean), standard deviation, median, total sum, minimum and maximum values present, and shows the number of processed numbers. -
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x2fasta
Tools for reformatting common sequence formats into fasta
A collection of tools to transform common biosequence formats (e.g. EMBL, SWISS-PROT, UniProtKB, GenBank and RefSeq) into the fasta sequence format. -
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This is a simple software for performing various statistical and mathematical operations on single ASCII data-files. Entire file is read into an array, which is then analyzed. Number of columns is detected automatically.
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SPADE
A toolkit for developing and deploying protein structure algorithms.
The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE. -
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yorick
scientific programming language and graphics
Yorick is an interpreted programming language for scientific simulations or calculations, postprocessing or steering large simulation codes, interactive scientific graphics, and reading, writing, or translating large files of numbers. -
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WARNING: Project moved to http://github.com/scemama/irpf90 IRPF90 is a Fortran90 preprocessor written in Python for programming using the Implicit Reference to Parameters (IRP) method. It simplifies the development of large fortran codes in the field of scientific high performance computing.
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The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.
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resParser
Command line scientific calculator
resParser is a command line scientific calculator exploiting "50 digit precision" floating point computations using GMP and MPFR library. The project is open source with GLP v2 licence and cross platform. It is implemented with QT for GUI and for useful classes like QString. In the begin it was just a tool for computation of resistors values. Very similar to Speed Crunch as features Features: * Command line input * Built-in functions (log, exp, sin, cos, ... -
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Phylogenetic software that implements the algorithms "Fast Computation of Distance Estimators" and "Fast Neighbor Joining".
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Graphical Grammar Studio
An user friendly grammar tool for natural language processing tasks
Full documentation with tutorials is included in the download package. Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. A grammar is represented by a state machine which can be visualized, edited... -
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PHDL
An HDL alternative to PCB graphical schematic capture tools.
...The language is compiled into a pcb netlist which can then be imported into a layout tool. We are currently on version 2.1 of the tool. We have created an eclipse plugin version of the tool as well as a standalone command-line based version. Both function identically and output a netlist that can be imported into a pcb layout tool. VHDL revolutionized how FPGA designs and digital logic circuits have been designed and captured and overcame many of the difficulties associated with the use of schematic editing tools. We believe the use of an HDL is also the way of the future when it comes to PCB design. ... -
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datadensityplot
Creates a data density plot of a 2 dimensional data distribution.
Shows the data density of a 2 dimensional distribution. The problem of showing data density visually is not mathematically well defined, and there are several methods. The program uses sum of reciprocal squared distance to calculate density at each point, with a smear factor to prevent points going to infinity. The smear factor also controls the amount of clustering. There are several options for colour output. Input is via a csv (comma-separated values) file. Now there's a nice GUI... -
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