Showing 1175 open source projects for "code source ping"

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  • 1
    HeatmapGenerator
    ....: "HeatmapGenerator: High performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline." Source Code for Biology and Medicine, 2014 9:30] HeatmapGenerator source code is available at: https://github.com/Bohdan-Khomtchouk/HeatmapGenerator Bohdan Khomtchouk wishes to acknowledge the support of the Department of Defense (DoD) through the National Defense Science & Engineering Graduate Fellowship (NDSEG) Program. HeatmapGenerator is released under the GNU GPL.
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  • 2
    PromKappa 2.0 (DNA patterns in Java)

    PromKappa 2.0 (DNA patterns in Java)

    PromKappa 2.0 (Java source code and bin)

    A Java adaptation of DNA patterns based on the article "Eukaryotic genomes may exhibit up to 10 generic classes of gene promoters". by Ilie Guta (Java source code for DNA patterns)
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  • 3

    Moose

    Multiscale Neuroscience and Systems Biology Simulator

    Moose is the core of a modern software platform for the simulation of neural systems ranging from subcellular components and biochemical reactions to complex models of single neurons, large networks, and systems-level processes. We have moved Github.com. This should be your source for the latest version of the code.
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  • 4

    xlsLib

    C++/C library to construct Excel .xls files in code.

    A multiplatform C++ library for dynamic generation of Excel .xls files containing multiple worksheets. Unlike .csv files, these can be directly opened by Excel and thus provide an excellent way to output large data sets that require further analysis. To see the latest changes, select "Files" and view the README text displayed at the bottom of that pane. IMPORTANT: Major changes are contained in the current SVN source. If you have time please try to use it or the...
    Downloads: 10 This Week
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  • 5
    NiCE

    NiCE

    Modeling and Simulation made NiCE!

    Notice! This project is now the Eclipse Integrated Computational Environment (ICE)! The new project page is www.eclipse.org/ice and the updated source code is at www.github.com/eclipse/ice . Contact: billingsjj <at> ornl . gov The NEAMS Integrated Computational Environment (NiCE) facilitates the flexible development, composition and use of a wide range of simulations, models and analysis tools for NEAMS integrated performance and safety codes.
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  • 6
    Petri-LLD is a graphical development environment for real-time automation control and is written in Java. It is based on a form of Petri net, and compiles to a number of programmable logic controller (PLC) languages as well as Java and Visual Basic.
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  • 7

    PneumaticDampener

    Software to analyze the behaviour of a pneumatic dampener

    This software perform the analysis of the pneumatic dampener under dynamic load. The loading is defined by the pressure table. For results the Adams integration scheme is used. Source code will be opened as soon as possible.
    Downloads: 0 This Week
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  • 8
    DNA patterns & application

    DNA patterns & application

    A software for generating DNA patterns

    ...BMC Genomics 2012, 13:512. [2] Gagniuc and Ionescu-Tîrgoviste. Gene promoters show chromosome specificity and reveal chromosome territories in humans, BMC Genomics 2013, 14:278. Source code VB6 (Visual Basic 6.0)
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  • 9

    linq-cube

    LinqCube is a small utility library to define in-memory cubes.

    LinqCube is a small utility library to define measures and dimensions in code an do in-memory cubes against LINQ queries. Why? Often you have the requirement to build some reports. For example all open cases over time, all open cases over time and status etc. Your queries are complicated enough to end up in large SQL Views or dozen's of single SQL Queries. Implementing a real OLAP Cube would be an overkill, because you only have 10.000s of rows. LinqCube was build to reduce SQL...
    Downloads: 0 This Week
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  • 10
    ChannelFinder Directory Service
    Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder
    Downloads: 0 This Week
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  • 11
    PortOpt

    PortOpt

    A portfolio-optimizer using Markowitz(1952) mean-variance model

    PortOpt [Portfolio Optimizer] is a C++ program (with Python binding) implementing the Markowitz(1952) mean-variance model with agent's linear indifference curves toward risk in order to find the optimal assets portfolio under risk. You have to provide PortOpt (in text files or - if you use the api - using your own code) the variance/covariance matrix of the assets, their average returns and the agent risk preference. It returns the vector of assets' shares that composes the optimal...
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  • 12
    CoreTML framework
    CoreTML framework is an open-source template-based configuration system allowing the developer to create parametrized templates by inserting special content to any text files. Its main purpose is to serve as a toolkit for semiconductor IP core creation (based on VHDL/Verilog).
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  • 13

    Control Interface Victor 86C, Voltcraft

    Control Voltcraft Power Supply and Victor 86C Multimeter

    ANNOUNCEMENT Project has moved to a proprietary website! http://www.instruman.it Updated source code available at https://instruman.codeplex.com/ This is an interface used to program and control Voltcraft DPPS-32-15 Power Supply, and to log data from Victor 86C Multimeter. It's an all-in-one solution to use the two instruments at the same time for Scientific, Research and Study purposes. Features avaible are the following: -Victor 86C USB HID connection protocol -86C data reading and logging -COM port selection -Continuous reading of Voltage and Current -Continuous logging of Voltage and Current in a Chart with the option to export data to csv file -Possibility to set logging rate from 50 ms -Turn ON and OFF instrument -Set Voltage and Current -Set a custom voltage loop to play and reiterate -Reiteration possible in three ways: for a fixed time, for a fixed number of cycles and until the STOP button is pressed
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  • 14
    PyRadmon Reborn

    PyRadmon Reborn

    PyRadmon, a Python script to use on both Linux and Windows.

    PyRadmon Reborn. This project started after the original programmers quit supporting it. The project now contains support for audio*, has a version that supports two Geiger counters** and a cleaner, more stable code. * = PyAudio is used as library for the audio support. ** = The two counters both run in their own thread. UPDATE-2015-2: * Added timeouts to sockets to prevent crashing of the script. * Updated some comments. UPDATE-2015-1: Since there have been some passed time...
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  • 15
    FUBI

    FUBI

    Full Body Interaction Framework

    FUBI is a framework for full body interaction using a depth sensor such as the Microsoft Kinect with OpenNI/NiTE or the Kinect SDK. It further supports the Leap Motion Controller. FUBI is written in C++ and includes a C#-Wrapper. Releases are tested on Windows 8.1, but there also exist Linux Code::Blocks project files. Fubi's main functionality is gesture and posture recognition according to four gesture categories: 1. Static postures: Configuration of several joints (positions or...
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  • 16

    Template Code Set for JModelica

    This is a template Python code set to use JModelica easily.

    This is a template Python code set which makes it easy to use JModelica to solve optimal control problem. The template includes a sample model definition file (opt_definition.mop) and a .bat file (run_me.bat) to start its calculation. After download the template, immediately you can run JModelica by only double-clicking run_me.bat file, and obtain the optimization result. Please go to the page given below for the information of how to start to use this and its details.
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  • 17
    NiftyRec
    This project, developed at UCL London, provides code for tomographic reconstruction. NiftyRec is written in C and has Python and Matlab extensions. Computationally intensive functions have a GPU accelerated version based on CUDA.
    Downloads: 2 This Week
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  • 18
    ASPI Kit
    # ASPI Kit - Adaptive Identification and Control Software This software is under development by the ASPICC group. Its purpose is to allow users to learn and experiment the use of Neural Networks (NN's) and related Computational Intelligence algorithms on their own data. Users can upload their own data and experiment with various algorithms of various setups to see how the algorithms performs on their data. Users can also investigate and familiarize themselves with the Python code of...
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  • 19
    Resistor Value Identifier

    Resistor Value Identifier

    Identify electronic resistor values

    This HTML utility allows the user to select standard color codes or surface mount numbers, then it identifies the resistor value. There is no need to memorize color codes or multipliers. An online working example of this program can be used at ZoomAviation.com/programs.
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  • 20

    gladTeX

    GladTeX -- embed LaTeX-quality images in HTML

    GladTeX is a preprocessor that enables the use of LaTeX maths within HTML code. The maths, embedded in <eq>..</eq> tags, as if within $$..$$ in LaTeX, is fed through latex and replaced by images. Additionally, alt-tags are auto-generated which display the LaTeX-equations when the HTML is viewed e.g. with a text mode browser or by someone with vision loss. The project home has moved, please visit https://humenda.github.io/GladTeX
    Downloads: 1 This Week
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  • 21
    ChIP-RNA-seqPRO

    ChIP-RNA-seqPRO

    ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)

    ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,...
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  • 22

    PyRate

    Bayesian Estimation of Speciation and Extinction from Fossil Data

    PyRate is a Python program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework. The method was described by D Silvestro, J Schnitzler, LH Liow, A Antonelli, and N Salamin in Systematic Biology (http://sysbio.oxfordjournals.org/content/early/2014/02/08/sysbio.syu006.abstract). *Please download the most up-to-date code from the "PyRate code" tab on this page or from: https://github.com/dsilvestro/PyRate * *An updated manual...
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  • 23
    Python Control Systems Library

    Python Control Systems Library

    Feedback control system analysis and design

    The Python Control Systems Library, python-control, is a python module that implements basic operations for analysis and design of feedback control systems. This homepage for this project is at http://python-control.org and the code base in maintained at https://github.com/python-control/python-control. Information on this page is out of date, but left here for posterity.
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  • 24
    ASN.1 library for Python
    ASN.1 types and codecs (BER, CER, DER) implementation in Python programming language. A collection of various ASN.1-based protocols data structures is supplied in a dedicated Python package. Project moved to GitHub: https://github.com/etingof/pyasn1
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  • 25
    ...In addition to accurate quantitation, iMet-Q provides the charge states and isotope ratios of detected compounds. It accepts input data in netCDF, mzXML, and mzML format and exports quantitation results in csv and txt format. The software source code is freely available under the license of GPL2.
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