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  • 1
    GIT quick statistics

    GIT quick statistics

    An efficient way to access various statistics in git repository

    ...For those who prefer to utilize command-line options, git-quick-stats also has a non-interactive mode supporting both short and long options. You can change to the legacy color scheme by toggling the variable _MENU_THEME between default and legacy. You can set variable _GIT_LIMIT for limited output. It will affect the "changelogs" and "branch tree" options. You can also exclude files from the stats. Note that it works with any alphanumeric, glob, or regex that git respects.
    Downloads: 4 This Week
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  • 2

    nsisplus

    nsis setup libraries and tools

    Set of NSIS setup libraries and tools. Includes 3dparty forked libraries recompiled with the latest NSIS SDK under the Microsoft Visual Studio 2010 including bug fix and new implementation. WARNING: Use the SVN access to find out new functionality and bug fixes. Primary: * https://svn.code.sf.net/p/nsisplus/NsisSetupDev/trunk * https://svn.code.sf.net/p/nsisplus/NsisSetupLib/trunk * https://svn.code.sf.net/p/nsisplus/NsisSetupSamples/trunk First mirror: * https://github.com/andry81/nsisplus--NsisSetupDev.git * https://github.com/andry81/nsisplus--NsisSetupLib.git * https://github.com/andry81/nsisplus--NsisSetupSamples.git Second mirror: * https://bitbucket.org/andry81/nsisplus-NsisSetupDev.git * https://bitbucket.org/andry81/nsisplus-NsisSetupLib.git * https://bitbucket.org/andry81/nsisplus-NsisSetupSamples.git
    Downloads: 0 This Week
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  • 3
    Amplicon_Sequencing_Worfklow

    Amplicon_Sequencing_Worfklow

    Analyzing amplicon data from sequences to stats

    This is a collection of scripts and instructions on how to analyzing amplicon sequence data (i.e., 16S, ITS2, & other marker genes). I created this workflow to create a consistent set of methods for analyzing amplicon sequence data, from when you first receive the sequence data to statistical analyses & data visualization. All you need is to have the latest version of R installed, some experience with the command line & shell, and enough memory to run all of the programs. There are also instructions provided in case you are running these analyses via a computing cluster/Slurm workload manager. ...
    Downloads: 0 This Week
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  • 4
    AICtools

    AICtools

    Workflow and set of tools for Automated Imagery Classification

    AICtools is a GIS workflow and set of tools to facilitate Automated Imagery Classification (AIC) and analysis of surface features over time. Allows bulk processing of large data sets, including automated metadata processing/filtering, compressed archive extraction and file manipulation, raster band compositing, pre-processing, mosaicking, clipping. Automates a subset of operations involved in classification of satellite imagery and the associated raster calculations used for time trend analysis.
    Downloads: 0 This Week
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  • 5

    Theophanu - Scenebuilding Environment

    Controls processing and daylight simulation with hierarchical models.

    ...It was developed together with a detailed simulation model of late antique Hagia Sophia in Istanbul as part of a research project at TU Darmstadt, supported by the DFG German Research Foundation, grant #5194526: "Die Hagia Sophia Justinians in Konstantinopel als Schauplatz weltlicher und geistlicher Inszenierung in der Spätantike" (http://gepris.dfg.de/gepris/projekt/5194526). Theophanu is implemented as a set of Makefiles, that are understood by gnumake (and possibly other, compatible software). It controls the open source, daylight simulation suite Radiance. To reference Theophanu: Lars O. Grobe (2003). Theophanu - Scenebuilding Environment. Version 0.1. https://sourceforge.net/p/theophanu
    Downloads: 0 This Week
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  • 6
    Logic Lab

    Logic Lab

    This is a suite of mathematical software solvers GUI

    This is a suite of mathematical software solvers interface on DLV and other command-line solvers. It helps researchers and students to better comprehend their declarative definitions published on papers. The user can have links to the related papers and to the software of the corresponding definitions.
    Downloads: 0 This Week
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  • 7

    QSdpR

    Viral Quasispecies Reconstruction software based on QSdpR algorithm

    This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population.
    Downloads: 0 This Week
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  • 8
    SPANDx

    SPANDx

    Comparative analysis of haploid next-generation genome sequence data

    SPANDx is your one-stop tool for identifying SNP and indel variants in haploid genomes using NGS data. SPANDx performs alignment of raw NGS reads against your chosen reference genome or pan-genome, followed by accurate variant calling and annotation, and locus presence/absence determination. SPANDx produces SNP and indel matrices for downstream phylogenetic analyses. Annotated, genome-wide SNPs and indels can also be identified if specified, and are output in human readable format. A...
    Downloads: 0 This Week
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  • 9

    openSEQ

    NGS compute distro proloaded with pipeline analysis software

    Forked Ubuntu 14.04 minimal install with XOrg and FluxBox desktop environment for web-based pipeline construction and job submission. HOWTO: 1) Set VM network settings to a bridged adapter type. 2) Load VM to client 3) From host: $ ssh -X ubuntu@<foobar> 'firefox && butterfly.server.py --unsecure' --- passwd = 616287xx 5) or ssh into host with X forwarding, and type runme This will launch an X-session of Firefox on the client, which will then be forwarded to the host. ...
    Downloads: 0 This Week
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  • 10
    RoboComp
    RoboComp is a robotics framework providing a set of open-source, distributed, real-time robotic and artificial vision software components and the necessary tools to create and manage them.
    Downloads: 0 This Week
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  • 11

    cnvOffSeq

    detecting & genotyping intergenic CNVs using off-target exome data

    cnvOffSeq is a set of Java-based command-line tools for detecting and genotyping intergenic copy number variation (CNV) using off-target data from whole-exome sequencing experiments.
    Downloads: 0 This Week
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  • 12

    Model Transformation Tools

    Bond-graph based modelling tools

    A set of tools for modelling dynamic physical systems using the bond-graph methodology and transforming these models into representations suitable for analysis, control and simulation. These tools use, and generate m files for, GNU Octave.
    Downloads: 2 This Week
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  • 13

    OSGC - OpenSource Geospatial Catalogue

    OpenSearch GeoSpatial Catalogue

    ...OSGC provides a catalogue engine built on top of a PostgreSQL+Postgis database, which exposes a cusmizable OpenSearch interface. Most of the application configuration can be set from the Admin web interface, while Data Administrators have a separated Dropbox interface, which ease the management of the catalog and the data storage, and a Data Gateway interface, which controls access to data and produces data access statistics. A stand-alone client web interface, written in HTML5 and Javascript, can be used to query this catalog and other compliant OpenSearch catalogs.
    Downloads: 0 This Week
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  • 14
    SubString is a set of shell scripts implementing substring reduction and frequency consolidation of word n-grams.
    Downloads: 0 This Week
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  • 15
    IMEP-Spice interface
    The developed graphical interface is based on the SKILL language which is a Lisp dialect used as a scripting language and PCell (Parameterized Cells) description language used in many EDA software suites by Cadence Design Systems.
    Downloads: 1 This Week
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  • 16

    r4st

    A database rapid application development tool

    The r4st ("Our Forest") project is a set of tools to assist with the rapid development of a database application. It uses shell scripts to drop/add Postgresql database tables/views with data loaded from sql and csv files. This process allows users to apply changes then re-build the system. It is essentially a customizable database regression system. The base schema and data module represent a plant database intended for educational and scientific usage.
    Downloads: 1 This Week
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  • 17
    A set of Unix command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, csv, or flat file format) with a header line. Provides delimiter and compression detection, column reference by name. * tblmap: per-line ("map") computation: derive columns through an expression, delete, reorder, filter rows
    Downloads: 0 This Week
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  • 18
    A general purpose distributed hash table adapted for sequence analysis. This program searches for all maximal, exact unique n-mers from a given set of genomes. Originally, this program's primary use was to design resequencing microarrays.
    Downloads: 0 This Week
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  • 19
    Netkit
    Netkit is a network emulation environment that allows the user to set up complex scenarios on a single PC with little effort and at no cost. In itself, Netkit aims at integrating different other open source products to provide an easy-to-use interface.
    Downloads: 1 This Week
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  • 20
    A helper function set written in bash to support DSLR image stacking with IRAF.
    Downloads: 0 This Week
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  • 21
    The dcmrelay is a set of utilities to relay dicom images or studies from dicom compliant modalities to different remote destinations where those images are needed for teleradiology, diagnosis or archive purposes. It mediates and anonymize images.
    Downloads: 0 This Week
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  • 22
    OOoLatex is no more maintained. Please consider using TexMaths (http://roland65.free.fr/texmaths/) OOoLatex is a set marcos designed to provide latex support into OpenOffice. Complex equations can be inserted as images, the latex code is saved into the image attribute while simpler equations are expanded into symbol characters to be inserted as text.
    Downloads: 7 This Week
    Last Update:
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  • 23
    LibSeris is a set of common code for controlling the Seris class of inexpensive personal robots, also created by this project.
    Downloads: 0 This Week
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  • 24
    Alliance CAD System is a free set of EDA tools and portable cell libraries for VLSI design. It covers the design flow from VHDL up to layout. It includes VHDL simulator, RTL synthesis, place and route, netlist extractor, DRC, layout editor.
    Downloads: 2 This Week
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  • 25
    This is a Tcl/Tk interface to a set of FORTRAN subroutines which implement empirical formulae for Physical Sputtering, Chemical Sputtering, Radiation Enhanced Sublimation. More PSIs to be added (Backscattering, etc..)
    Downloads: 0 This Week
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