Search Results for "gnu science"
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Showing 40 open source projects for "gnu science"
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Systems Biology Markup Language (SBML)
A file format for exchanging computational models in systems biology
The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more. -
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DAMIAN
Identification of pathogenic microorganisms in diagnostic samples
DAMIAN provides capabilities to detect known and novel pathogens in RNA and DNA samples of various sources. It integrates all required processing steps, ranging from the quality control of sequencing reads to the generation of comprehensive reports. The method works for any host organism. -
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SODE
Program to solve differential equations using long Taylor series
Program to generate a program to numerically solve either a single ordinary differential equation or a system of them.It is a Ruby program, now called omnisode, which generates either Ruby, C, C++, Maple or Maxima code. Code can be generated for all languages under Linux. Ruby can be generated under Windows. All can be generated under cygwin, but would need work on execution of Maple. Omnisode itself is Ruby, which is needed in all cases to generate the program. -
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Spark is a physical simulation system. The primary purpose of this system is to provide a *generic* simulator for different kinds of simulations. In these simulations, agents can participate as external processes.
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CanReg5 (moved to Github)
Canreg5 is a software package for population based cancer registries
Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry,... -
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CRAFT HPC Floating-point Analysis
CRAFT: Configurable Runtime Analysis for Floating-point Tuning
CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft -
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** The OpenStudio Legacy Plug-in has been relaunch as Euclid by Big Ladder Software, please see the new homepage: http://bigladdersoftware.com/projects/euclid/ ** The Legacy OpenStudio SketchUp Plug-in makes it easy to create and edit the building geometry in your EnergyPlus input files. Note that active development has moved to the more comprehensive OpenStudio suite of tools and libraries at https://www.openstudio.net/.
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mx is a Ruby/Rails code base with broad application in evolutionary biology, it includes general functionality for matrix handling, sequence management, ontology construction, specimen handling, taxonomic catalogs, taxonomic descriptions and more
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ID11B Mailin
Rails based mailin system for ID11B
A rails based sample mailin system for the ID11B beamline at the Advanced Photon Source -
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rnasimulase
Simulation of allele-specific RNA-seq data
Simulation of allele-specific RNA-seq data -
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ClearCanvas
Open source DICOM and RIS/PACS informatics platform
Open source code base for enabling software innovation in imaging. The extensible and robust platform includes viewing, archiving, management, workflow and distribution of images as well as an open architecture for core competency tool development. -
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Fulguro is an optimized 2D library for image processing with Mathematical Morphology and Linear processing
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The TIMTAM (Target Information Management Tracking And More) system implements a secure knowledgebase supporting the management, tracking, and analysis of experimental data associated with structural biology projects.
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Object oriented reusable software classes designed to be used to construct larger software projects developed in multiple software languages.
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ruby-sphere is a set of libraries and user interfaces written in Ruby to calculate apparent positions of stars with a moderate accuracy. Its goal is to provide an easy way to plan astronomical observations.
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Remote monitoring and controll system for home use. Main goal is to create multilayer software for collecting data (weather data, measured data), gain remote access via web page, and controll some aspects like heating and lighting. https://flattr.com
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rSIGNAL - ruby Simple Inter-Interface Generic Aggregation Layer. It allows external data sources to be aggregated, store the aggregated data and print the aggregated data out in a transformed format to a file (or integrated HTTP server) on demand.
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RubyMoss is a Web - Based Framework written with Ruby on Rails, intended to support all analysis and data processing for Mossbauer Spectroscopy. Written under BSD License.
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An STL format importer/exporter plugin script for Google SketchUp. Supports both binary and ASCII import and export.
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Interactive mesh creation tool. Discretizer will create geometry and meshes for three dimensional flow simulations (CFD). Geometry import is not a goal: Discretizer will be furiously fast geometry builder(on many common engineering applications at least)
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Ruby Research Wiki (RRiki) can be used to keep notes and organize references for research. It uses a browser interface, an intuitive plain text formatting language (markdown), and facilities to cross-reference and hierarchically organize notes
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PORIS toolkit allows describing graph-based systems and their behavior in a snapshot. It provides a web editor for a domain visual specific language (DSL) and transformation tools to generate software prototypes, system configurations, ...
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HornetsEye Ruby Computer Vision Library
Ruby computer vision library
Video processing and computer vision library for GNU/Linux offering interfaces to do image- and video-I/O with ImageMagick/Magick++, Xine, firewire digital camera (DC1394), and video for linux (V4L2). Note that this version of HornetsEye is deprecated. HornetsEye now is released as multiple packages on RubyGems.org. The source code is available on Github.com (see https://wedesoft.github.io/hornetseye-doc/ for more information).
