Search Results for "scsi-target-utils"
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Showing 30 open source projects for "scsi-target-utils"
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pyVideoTrans
Translate the video from one language to another and embed dubbing
pyVideoTrans is an ambitious open-source multimedia processing project that assembles speech recognition, subtitle generation, AI translation, voice synthesis, and video assembly into a unified pipeline for converting videos from one language to another with embedded dubbing and captions. At its core it runs speech-to-text models to transcribe audio tracks, translates the resulting text into a target language using local or cloud-based translation engines, synthesizes new speech to match the translated subtitles, and then merges that speech back into the video, creating a fully localized media file. The tool supports both command-line and GUI modes, making it accessible to developers and creatives needing batch or automated processing. -
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Superstaq
Quantum software platform that is optimized across the quantum stack
This repository is the home of the Superstaq development team's open-source work. Our quantum software platform is optimized across the quantum stack and enables users to write quantum programs in Cirq or Qiskit and target a variety of quantum computers and simulators. -
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BQSKit
Berkeley Quantum Synthesis Toolkit
...It can be used with ease to compile quantum programs to efficient physical circuits for any QPU. A standard workflow utilizing BQSKit consists of loading a program into the framework, modeling the target QPU, compiling the program, and exporting the resulting circuit. -
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AWS Data Wrangler
Pandas on AWS, easy integration with Athena, Glue, Redshift, etc.
An AWS Professional Service open-source python initiative that extends the power of Pandas library to AWS connecting DataFrames and AWS data-related services. Easy integration with Athena, Glue, Redshift, Timestream, OpenSearch, Neptune, QuickSight, Chime, CloudWatchLogs, DynamoDB, EMR, SecretManager, PostgreSQL, MySQL, SQLServer and S3 (Parquet, CSV, JSON, and EXCEL). Built on top of other open-source projects like Pandas, Apache Arrow and Boto3, it offers abstracted functions to execute... -
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MCPower
MCPower — simple Monte Carlo power analysis for complex models
...It guides users through the full workflow across three tabs: Model setup (formula input with live parsing, CSV data upload with auto-detected variable types, effect size sliders, and correlation editing), Analysis configuration (find power for a given sample size or find the minimum sample size for a target power, with multiple testing correction and scenario analysis), and Results (interactive charts, exportable tables, and auto-generated Python replication scripts). Supports both standard linear models and mixed-effects models. Additional features include analysis history, configurable scenarios, and built-in documentation. -
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Astronomical-Image-Refiner
This repository contains the complete code and data for studying primo
...Data ingestion tools for MAST/HST/JWST FITS downloads. 📂 Repository Structure Primordial-Photon-Dark-Photon-Entanglement/ ├── Physics_Validation_Tests.py ├── Expected_Numerical_Results.py ├── utils/ │ ├── preprocessing.py │ ├── fits_tools.py │ └── visualization.py ├── notebooks/ │ ├── Photon_DarkPhoton_Cluster_ -
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...Developed by CTI, a Brazilian research center. **<div class="sf-root" data-id="250926" data-badge="oss-users-love-us-white" style="width:125px"> <a href="https://sourceforge.net/projects/br-gogo/" target="_blank">Br-Gogo</a> </div>**
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miRPV
miRPV: An automated pipeline for miRNA Prediction and Validation in si
miRPV is an Automated tool that allows users to predict and validate microRNA from genome/gene sequence. System Requirement CPU: AMD64 (64bit) Memory: 2Gb RAM Storage: 5Gb Ubuntu 18.04 -
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DEBay
Deconvolutes qPCR data to estimate cell-type-specific gene expression
...It will be useful in experiments where the segregation of different cell types in a sample is arduous, but the proportion of different cell types in the sample can be measured. DEBay uses the population distribution data and the qPCR data to calculate the relative expression of the target gene in different cell types in the sample. The user manual of DEBay: https://sourceforge.net/projects/debay/files/UserManual.pdf Sample data: https://sourceforge.net/projects/debay/files/Test_data/ Citation Information: Vimalathithan Devaraj, Biplab Bose. DEBay: A computational tool for deconvolution of quantitative PCR data for estimation of cell type-specific gene expression in a mixed population. ... -
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This is a Python-based efficient implementation of several semantic similarity measures. The target is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology (GO).
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MethyMer
Design of specific primer combinations for bisulfite sequencing
MethyMer is a Python-based tool aimed at selecting specific primers for amplification of complete CpG islands. These regions are difficult in terms of selection appropriate primers because of their low-complexity, polyN-, CG-richness, etc. MethyMer have a flexible scoring system capable of selecting primers in problematic regions (e.g. SpG islands) and includes specificity test (based on bowtie alignment against bisulfite-treated genome). It also incorporates TCGA CpG methylation... -
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siFi21
si-Fi is a Software for RNAi (RNA interference) off-target prediction.
si-Fi is a Software for RNAi (RNA interference) off-target prediction The software is designed for checking long-double stranded RNAi constructs for target specificity and silencing efficiency. It can be used also to select sequence regions suitable for designing RNAi constructs. The program provides clear tabular and graphical outputs. -
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RTS2 - Remote Telescope System
Open source observatory control software
RTS2 is project to create an open source environment for control of a fully autonomous observatory. It is running about dozen fully autonomous observatories. Its modular design allow easily addition of new devices (to already huge supported HW list). -
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2DFLT
Program for Normalization, Averaging and Editing of In Situ Data Sets
...Resulted data can be saved as one flat file (FLT-format) which can be used for PSD/MED calculations via 2DMED software (http://sourceforge.net/projects/twodmed/?source=directory). 2DFLT specifically was written to target in situ X-ray Powder Diffraction data from synchrotron measurements. Hence it can read CHI, XYE (TOPAS), FXYE(GSAS/ GSASII) and XY- files formats. However it can read general in situ data written into individual TXT or XY – files. -
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InMethyl
Design of target-specific primers for bis. sequencing of CpG-islands
InMethyl is a Python-based application for the design of target-specific primer combinations for PCR amplification and bisulfite sequencing of complete CpG-islands. InMethyl uses bowtie high-throughoutput aligner to identify potential mis-priming sites in the bisulfite treated or intact genome and then – undesirable potential PCR products. InMethyl provides a balance between various characteristics that allows to pick up primers in hard-to-study genomic regions. -
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miRStat
identification of common sets of microRNAs for groups of genes
miRStat enables identification of regulatory microRNA targeting several genes in a custom gene group. This Python application is based on the TargetScan 6.2 microRNA target prediction data. Conserved and Nonconserved site context+ scores files are required (unzip and place to directory with program). Available at http://targetscan.org/cgi-bin/targetscan/data_download.cgi?db=vert_61 -
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mitoMaker
mitoMaker - a mitochondria assembly and annotation script
mitoMaker is a pipeline script developed to simplify the assembly and automatic annotation of mitochondrial genomes, based on raw NGS reads and an optional target reference. mitoMaker calls well known assemblers and algorithms, such as SOAPdenovo, MIRA and blast+ and parses their results providing easily readable outputs, such as FASTA, GENBANK, SEQUIN, PNG and others. General pipeline: 1-iterative De Novo assembly, with different k-mer values, trying to assemble a build that matches a target mitochondrial genome given. 2-searches for all mitochondrial gene features and circularization. 3-stores the best result found. 4-uses the best assembly as backbone for a reference based assembly, using MIRA and MITObim, trying to extend the mitogenome and close gaps. 5-annotates the best assembly, identifying the start and end position of each and every feature. 6-creates a folder with all the results (PNG, GENBANK, FASTA, SEQUIN, CAF, MAF and a stats logfile). -
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Protospacer
Rapid gRNA design and validation for CRISPR
...From here, users are able to evaluate potential off targeting, to export results in FASTA format or tabulated (e.g. for Microsoft Excel), and to connect to the Integrative Genomics Viewer (IGVref) and view target-sites in the context of genomic annotations, amino acid translations, and HT-Seq data (for off-target validation). We provide online video tutorials and a toy database from our main website. -
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wiki export tool
A tool for exporting Wikipedia data
A simple tool, created in a French project "CoMeRe", for exporting data from all Wikimedia fundation projects, include Wikipedia. To use this, you need prepare two things: Target dump of Wiki Target page name Then, configure the tool with dump path and input the page name, finally just let's it run, you will get the target page. Duration is dependent on size of the dump, and the number of pages. Take care for using option "talk, other talk...", this is now only for french corpora. -
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mitoMaker
mitoMaker - a mitochondria pipeline wrapper script
Mitomaker is a pipeline wrapper, result analyzer and automated annotator, written in Python v2.7, that, with the help of other programs, builds, analyzes, looks for the best build and annotates target genomes (such as mitochondria and cloroplast). It could be used with other targets, such as specific genes, or transcriptomes, even though that is not it's primary goal, nor thoroughly tested. After various attempts to build different mitochondrial genomes in the lab I studied, a general pipeline started to appear: assemble reads with MIRA or SOAPdenovo-Trans, look for a scaffold/contig that matches a closely-related species, check it to see if all expected genomic features are present (since mitochondria is well conserved), check to see if the assembly might have circularized (since it's a circular DNA). ... -
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ppc_sim_booke
e500v2 simulator
An experimental ISS for freescale's e500v2 core. It is meant to simulate only cpu and memory subsystem and is purely intended for academic/learning purposes only. -
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crosscenter
Program to compute cross center
Assisted program to compute the center of a cross in an image. It is based in python and opencv. Main target is massive data processing. Developed for my Ph.D. -
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syphon is an extension for mod_openopc, to monitor telnet devices (serial devices) that sit on Serial -to- Ethernet bridges (such as barcode scanners) and export parsed data to an OPC compliant device (such as a PLC).
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... * tblred: compute ("reduce") aggregations (e.g., sum, average) over groups defined by key columns. * tbldesc: Summarize columns in file (e.g., proportion of character/numeric values, min/mean/median/max, missing values, correlation with a target column). * tbljoin: Relational join without the need of pre-sorting and column matching. * ... See HostedApps/MediaWiki for examples.
