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Because GAjoe of ATSAS cannot deal with WAXS range, and no parameters can be modified. I made a code by myself to use GA for finding best EOM for SAXS/WAXS. The project need ATSAS crysol and a folder with multiple pdb files to use.
itom - an Open Source Measurement, Automation and Evaluation Software
itom is an open source software suite for operating measurement systems, laboratory automation and data evaluation. One main application of itom is the development and operation of sensor and measurement system for instance in a laboratory environment. Therefore, the software has to be able to communicate with a wide range of different hardware systems, such as cameras or actuators and should provide a diversified and as complete as possible set of evaluation and data processing methods....
...It works well with the Zipline open source backtesting library. At the core of pyfolio is a so-called tear sheet that consists of various individual plots that provide a comprehensive image of the performance of a trading algorithm. Here's an example of a simple tear sheet analyzing a strategy. Quantopian also offers a fully managed service for professionals that includes Zipline, Alphalens, Pyfolio, FactSet data, and more.
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* Two automatic align method: align-points; phase correlation,
* One manual align method.
* sub-pixel precision (0.1 pixel for phase correlation and 0.01 pixel for manual alignment).
* Automatic image derotation.
* FITS file support (by installing the python2 package 'astropy')
* Hot pixels suppression algorithm
* CR2 files native support
* Can load/save video
* Grayscale RAW image support
* Editing of result image's levels.
* Light curve generation
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A simple interface for performing geneticalgorithm optimization for numerical problems. I am starting with a stripped-down version, where a solution can be described using a single vector of float numbers. Eventually, I will expand to more generic data structures and add multiple-species search options.
For the time being, I have no plans of developing a GUI. For now, this is strictly a computational module.
PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
imbatcher is an image batcher and rfl Registax Frame List creator that use an Mean Square Difference algorithm to separate images from the same set automatically .
A geneticalgorithm in Python for evolving programs that write a given string to an allocated dataspace, using a made-up machine language with only 7 instructions and flow reversal.
This project is a complete cross-platform (Windows, Linux) framework for Evolutionary Computation in pure python. See the project site at http://pyevolve.sourceforge.net or the blog at http://pyevolve.sourceforge.net/wordpress
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PGAF provides a framework tuned, user-specific genetic algorithms by handling I/O, UI, and parallelism. It is designed for optimizing functions that take a "very long time" to evaluate.
The Automatic Model Optimization Reference Implementation, AMORI, is a framework that integrates the modelling and the optimization processes by providing a plug-in interface for both. A geneticalgorithm and Markov simulations are currently implemented.
DrPangloss is a python implementation of a three operator geneticalgorithm, complete with a java swing GUI for running the GA and visualising performance, generation by generation
PyPotrace is a Python programming language binding for Peter Selinger's Potrace raster to vector conversion algorithm. No separate Potrace library or application required!
Galileo is a library for developing custom distributed genetic algorithms developed in Python. It provides a robust set of objects that can be used directly or as the basis of derived objects. Its modularity makes it easy to extend the functionality. The
A GeneticAlgorithm Training System in Python.
Gatspy provides the framework, the user provides the error
(fitness) function. Gatspy will evolve a solution that
attempts to minimize the error.
aVolve is an evolutionary/geneticalgorithm designed to evolve single-cell organisms in a micro ecosystem. It currently uses the JGAP Geneticalgorithm, but does include a primitive geneticalgorithm written in Python.