Search Results for "format conversion"

CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format.

A desktop application to solve statically determinate and indeterminate 2D truss structures using Matrix Displacement Method (aka Finite Element Method).

...Spectral takes files produced by Jasco instruments (uv-vis absorbance, fluorescence, circular dichroism readings as a function of wavelength, temperature, or time) and facilitates basic operations such as unit conversion (CD spectra), conversion into the format taken by CDPro (estimation of secondary structure; CD spectra), scatter correction (absorbance spectra), smoothing, re-sampling of the x-axis, and generic combination (sum, product, average, standard deviation) of multiple curves. Spectral-SpecPro is based on earlier software written by Stephen R Martin (MRC-NIMR London NW7 and Francis Crick Institute London NW1).

...In the units and in the scale. This class try to solve this issue, buy instead of numbers use a class that contains both: The number in int,float and the units / reciprocate units. A conversion table is integrated, and preloaded with standard units. But you are not limited to those units. You can define the units you want. You can select between manual register of units, automatic register. You can create and modify different environments to define conversion and the way the output of the units are converted. If you use this class in IPython you get your terms printed in nice LaTeX format.

The basis sets included with ECCE have -- as far as I can tell -- not been updated for many years. In addition, many of the newer basis sets that come with nwchem aren't included, such as the def2- series. nwbas2ecce is a python script that aims to automate as much as possible of the conversion process of a nwchem basis set file into the files necessary for ECCE to included it in the basis set tool. The process isn't completely automatic, but I also believe that it shouldn't be to...

CellPublisher is a free, open source program to improve the navigation of biological pathways. It converts CellDesigner diagrams into fully-featured maps that live inside a browser. The navigation is based on the Google maps API.

Mos2Gnu is a conversion utility to generate a GNU MathProg description file, understandable by the GNU Linear Programming Kit from the proprietary X-Press Mosel's file format