Search Results for "format"
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Showing 109 open source projects for "format"
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Blender GIS
Blender addons to make the bridge between Blender and geographic data
Import in Blender most commons GIS data format, Shapefile vector, raster image, geotiff DEM, OpenStreetMap XML. There are a lot of possibilities to create a 3D terrain from geographic data with BlenderGIS, check the Flowchart to have an overview. Display dynamics web maps inside Blender 3d view, requests for OpenStreetMap data (buildings, roads, etc.), get true elevation data from the NASA SRTM mission. -
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Open X-Embodiment
Unified open dataset enabling cross-embodiment learning for robotics
Open X-Embodiment is a large-scale collaborative initiative led by Google DeepMind to unify robotic learning datasets into a consistent and standardized format, simplifying access and usage across the robotics research community. Its primary goal is to make all available open-source robotic data interoperable by representing them using the RLDS (Reinforcement Learning Dataset Structure) episode format. This enables seamless integration for training, evaluation, and model development across diverse robotic tasks and embodiments. ... -
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Science Plots
Matplotlib styles for scientific plotting
Matplotlib styles for scientific figures. This repo has Matplotlib styles to format your figures for scientific papers, presentations, and theses. -
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Napkin
An Infinitely Large Napkin
Napkin (also titled “An Infinitely Large Napkin”) is a lightweight, semi-formal introduction to higher mathematics, aimed at giving readers a bird’s-eye view over various mathematical fields. It is not a polished textbook full of full proofs; rather it offers clean definitions, theorem statements, intuitive motivations, and informal sketches of why things work, with the goal of building conceptual understanding. The coverage spans undergraduate and early graduate topics, designed to show how... -
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Vedo
A python module for scientific analysis of 3D data
...Inspired by the vpython manifesto "3D programming for ordinary mortals", vedo makes it easy to work with 3D pointclouds, meshes and volumes, in just a few lines of code, even for less experienced programmers. vedo is based on VTK and numpy, with no other dependencies. Import meshes from VTK format, STL, Wavefront OBJ, 3DS, Dolfin-XML, Neutral, GMSH, OFF, PCD (PointCloud). Export meshes as ASCII or binary to VTK, STL, OBJ, PLY formats. Analysis tools like Moving Least Squares, mesh morphing and more. Tools to visualize and edit meshes (cutting a mesh with another mesh, slicing, normalizing, moving vertex positions, etc..). ... -
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Free DELTA
Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format. -
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PySchool
Installable / Portable Python Distribution for Everyone.
PySchool is a free and open-source Python distribution intended primarily for students who learn Python and data analysis, but it can also used by scientists, engineering, and data scientists. It includes more than 150 Python packages (full edition) including numpy, pandas, scipy, sympy, keras, scikit-learn, matplotlib, seaborn, beautifulsoup4... -
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asammdf
Fast Python reader and editor for ASAM MDF / MF4 (Measurement Format)
*asammdf* is a fast Python parser and editor for ASAM (Associtation for Standardisation of Automation and Measuring Systems) MDF / MF4 (Measurement Data Format) files. It supports MDF versions 2 (.dat), 3 (.mdf) and 4 (.mf4). *asammdf* works on Python 2.7, and Python >= 3.4 -
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CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. The CBFLIB API is loosely based on the CIFPARSE API for mmCIF files.
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Madagascar is a software package for geophysical data processing and reproducible numerical experiments. The package mission is to provide a convenient environment for researchers working with digital image and data processing in geophysics and related fields.
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SDF Merger
Desktop application for merging multiple SDF files into a single SDF
...Real-time Progress Tracking: Visual progress bar and status updates during merging Technical Specifications: 1. Language: Python 3 2. GUI Framework: Tkinter 3. Chemistry Library: RDKit for chemical data processing 4. File Formats: Input/Output in SDF format Citation Md. Ismiel Hossen, A. (2026). SDF Merger: A Desktop and Web Tool for Merging Chemical Structure Data Files (v1.1). Zenodo. https://doi.org/10.5281/zenodo.18291398 -
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KherveSheet
Excel for scientists: high-quality plots, Python in cells, AI side bar
...Learn by doing with 300 ready-made scientific examples covering plotting, data analysis, fitting and simulation. Built entirely in Python, KherveSheet adds a familiar Excel-style grid, an optimisation solver, and a native .ksheet format with CSV and Excel import/export. Runs on Windows. -
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GrainSizeTools script
A Python script for estimating the grain size from thin sections
Homepage & docs: http://marcoalopez.github.io/GrainSizeTools/ GrainSizeTools is a free, open-source, cross-platform script written in Python that provides several tools for (1) estimating average grain size in polycrystalline materials, (2) characterizing the nature of the distribution of grain sizes (either from apparent distributions or approximating 3D grain size distributions via stereology), and estimating differential stress via paleopizometers. The script requires as the input the... -
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crossmap
convert genome coordinates betweeen assemblies
CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format. -
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Sezioni
Python tool for section property evaluation and stress calculation
...Results are plot with selectable color maps. Point results are listed and may be exported. Section can be also input in Nastran style and then exported to a .bdf format file. -
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QuickPlot
Simple user interface for gnuplot aimed for reflectometry data
Graphical user interface for gnuplot to create publication quality figure very quickly. It supports templates for fast formatting of graphics, different plot styles, insets, axis and label options. One important feature is storing metadata in png and pdf files that can be used to reload any graph saved with QuickPlot. -
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Truss-101
A desktop application written in Python to solve 2D truss structures.
A desktop application to solve statically determinate and indeterminate 2D truss structures using Matrix Displacement Method (aka Finite Element Method). -
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aseryla
Aseryla code repositories
This project describes a model of how the semantic human memory represents the information relevant to the objects of the world in text format. It provides a system and a GUI application capable of extracting and managing concepts and relations from English texts. https://aseryla2.sourceforge.io/ -
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MutaNET
NGS Pipeline and Automated Mutation Analysis
MutaNET comes with a next generation sequencing (NGS) pipeline that calls mutations based on paired-end NGS reads, an automated mutation analysis tool and various file converters and mergers. The mutation analysis feature considers the coding region, protein domains, regulation and transcription factor binding site information, and can be used to analyse the potential impact of mutations on antibiotic resistance. -
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Pytorch Points 3D
Pytorch framework for doing deep learning on point clouds
...Core implementation of common components for point cloud deep learning - greatly simplifying the creation of new models. 4 Base Convolution base classes to simplify the implementation of new convolutions. Each base class supports a different data format. -
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MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
...MToolBox includes an updated computational strategy to assemble mitochondrial genomes from Whole Exome and/or Genome Sequencing (PMID: 22669646) and an improved fragment-classify tool (PMID:22139932) for haplogroup assignment, functional and prioritization analysis of mitochondrial variants. MToolBox provides pathogenicity scores, profiles of genome variability and disease-associations for mitochondrial variants. MToolBox provides also a Variant Call Format file (version 4.0) featuring, for the first time, allele-specific heteroplasmy. Please, check out the most recent updates of the source code with the Github repository of MToolBox: https://github.com/mitoNGS/MToolBox or visit the Web version of MToolBox @ MSeqDR: https://mseqdr.org/mtoolbox.php -
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OpenDAFF
Directional Audio File Format
OpenDAFF is a free, open-source software package for directional audio data - like the directivity of microphones, speakers, as well as head-related transfer functions (HRTFs) -
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ebfformat
An Efficient Binary data Format
EBF, which stands for Efficient Binary Format, is a binary file format for reading and writing binary data easily. Reading writing routines are currently available in C,C++,Fortran,Java, Python, IDL, MATLAB. A program called ebftkpy which has a set of utility functions to work with the .ebf files , e.g., viewing the contents and getting a summary, is also provided. The EBF specification is designed to be concise and easy to understand to make it easier for others to write their own code if needed. ... -
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Crystalsim - XRD hkl simulation
X-ray diffraction (XRD) analysis for hkl simulation of any crystal.
...Crystalline lattice parameters such as ‘a’, ‘b’, ‘c’ as well as interfacial angles such as alpha, beta, gamma can also be entered manually. Processed data can be saved as .csv file format. Designed by M Kanagasabapathy, Associate Professor, Department of Chemistry, Rajus' College, Affiliated to Madurai Kamaraj University Rajapalayam (TN) India email: rrcmks(at)gmail.com