Search Results for "content analysis"
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Showing 12 open source projects for "content analysis"
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Napkin
An Infinitely Large Napkin
Napkin (also titled “An Infinitely Large Napkin”) is a lightweight, semi-formal introduction to higher mathematics, aimed at giving readers a bird’s-eye view over various mathematical fields. It is not a polished textbook full of full proofs; rather it offers clean definitions, theorem statements, intuitive motivations, and informal sketches of why things work, with the goal of building conceptual understanding. The coverage spans undergraduate and early graduate topics, designed to show how... -
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pyLogos
Qualitative content analysis software.
pyLogos is a program to support text content analysis. Documents (imported from txt and docx files) are stored in a database, and may have marked text segments associated with codes. It is possible to retrieve these segments in various ways, generate word clouds, tabulate frequency of codes and words, among other outputs. pyLogos é um programa de apoio à análise de conteúdo de textos. -
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ViReMa
Viral Recombination Mapper
...Feb 2014 - Our paper (Open Access) is available at Nucleic Acids Research: "Discovery of functional genomic motifs in viruses with ViReMa–a Virus Recombination Mapper–for analysis of next-generation sequencing data" http://nar.oxfordjournals.org/content/42/2/e11 This is an on-going project and updates will be regularly posted. Please get in touch with any questions, problems or suggestions. -
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MethyMer
Design of specific primer combinations for bisulfite sequencing
MethyMer is a Python-based tool aimed at selecting specific primers for amplification of complete CpG islands. These regions are difficult in terms of selection appropriate primers because of their low-complexity, polyN-, CG-richness, etc. MethyMer have a flexible scoring system capable of selecting primers in problematic regions (e.g. SpG islands) and includes specificity test (based on bowtie alignment against bisulfite-treated genome). It also incorporates TCGA CpG methylation... -
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Maximum Common Genome Alignment (MCGA)
Pipeline for creating core genome alignments for phylogenetic analysis
Maximum Common Genome Alignment (MCGA) Tool MCGA is a bioinformatics analysis tool written in Python for generating core genome alignment for bacterial whole genome sequences which can be used to construct phylogenetic trees. -
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GASiC
Genome Abundance Similarity Correction
One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. -
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MyNook
A machine learning system for supervised document classification
An open source system for supervised document classification based on statistical machine learning techniques. On the contrary of the state of art classification techniques, MyNook just requires the title of the document, not the content itself. -
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GIIAF Microscopy Library
The GIIAF Microscopy Library, that uses customised OMERO software
This project incorporates a suite of tools that aim to allow researchers within Griffith's Imaging and Image Analysis Facility (GIIAF) to efficiently and effectively provide secure, centralised, web-accessible data storage, management and manipulation. The open-source Java-based OMERO software was customised to provide most of the features of this project. -
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ftc is a python script for content-based file type classification based on an file extension and magic number database, and several computational intelligence algorithms.
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A tool for windows users, to determine the type of a file based on its content rather than it suffix.
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