Showing 757 open source projects for "web-based"

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  • 1
    D-Tailor

    D-Tailor

    D-Tailor: automated analysis and design of DNA sequences

    Recent advances in DNA cloning and synthesis technologies afford high throughput implementation of designed sequences into living cells. However, our ability to design sequences to interrogate multifactorial biological processes and further engineer biological functions is lagging behind. DNA-Tailor (D-Tailor) is a fully extendable software framework for biological sequence analysis and multi-objective sequence design. D-Tailor permits the seamless integration of an arbitrary number of...
    Downloads: 0 This Week
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  • 2
    owfs and owhttpd

    owfs and owhttpd

    Project moved to https://github.com/owfs/owfs/

    ...Use the Dallas 1-Wire and iButton chips with standard filesystem commands. Create temperature loggers. Monitor everything. OWHTTPD -- same system, only used as a light weight web server. OWFS is also ported to embedded routers, Mac OSX and Windows. Basically you can use these inexpensive little sensors and other chips with very simple wiring to sense and control the physical environment. The interface is very flexible -- everything from a web browser, to read and writing directly to the chip's "file" to integrating with your programs -- even over the internet. ...
    Downloads: 22 This Week
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  • 3
    TEACUP

    TEACUP

    TCP Experiment Automation Controlled Using Python

    ...TEACUP enables repeatable testing of different TCP algorithms over a range of emulated network path conditions, bottleneck rate limits and bottleneck queuing disciplines. TEACUP utilises a text-based configuration file to define experiments as combinations of parameters specifying desired network path and end host conditions. When multiple values are provided (e.g. for TCP congestion control algorithm), an experiment is made up of multiple tests. For each experiment and test, TEACUP collects a range of data, such as tcpdump files of traffic seen or TCP stack information (e.g. using Web10G). ...
    Downloads: 0 This Week
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  • 4

    PPLine

    SNP calling, annotation and gene/transcripts expression quantification

    PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of the results
    Downloads: 0 This Week
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  • 5

    lr2rmats

    Long read to rMATS

    lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis. More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/
    Downloads: 0 This Week
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  • 6

    Inelastica

    Transport code and tools based on SIESTA and TranSIESTA (DFT-NEGF)

    NOTE: The Inelastica project moved to https://github.com/tfrederiksen/inelastica/ in February 2018. Pre- and post-processing tools for SIESTA (DFT, quantum chemistry) and TranSIESTA (quantum transport): (1) Calculate phonon frequencies, e-ph couplings, and inelastic contributions to the conductance (IETS). (2) Access Hamiltonian etc from Python. Some code documentation and installation instructions are available at this mediawiki page: http://dipc.ehu.es/frederiksen/inelastica/index.php.
    Downloads: 0 This Week
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  • 7
    Acoustic Research Tool (ART)

    Acoustic Research Tool (ART)

    Acoustic Simulation Library for Frequency and Time Domain Simulations.

    ...In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX expressions. Cylindrical and conical ducts can also be defined based on their geometry. Available models and their parameters can be enumerated and combined to form simulators for complex acoustical structures. Parameters can be specified symbolically by expressions containing other parameter values or global variables. Dependencies between parameters are resolved at run time. However, MuParserX expressions are compiled at design time. ...
    Downloads: 0 This Week
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  • 8
    trnsys-fmu

    trnsys-fmu

    The FMI++ TRNSYS FMU Export Utility

    ...This documentation also contains a tutorial on how to export a TRNSYS model as FMU for co-simulation and how to link it with a simple controller implemented in Modelica. The tool is based on code from the FMI++ library.
    Downloads: 0 This Week
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  • 9
    Pootle Django

    Pootle Django

    Online translation tool

    ...Files can be downloaded for offline translation. Delegate to your translators and allow them to commit directly to your version control systems. Pootle can easily be adapted and integrated into your existing web look and feel.
    Downloads: 0 This Week
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  • 10
    Spectral-SpecPro

    Spectral-SpecPro

    Spectral - software for manipulating optical spectroscopy data

    ...Spectral takes files produced by Jasco instruments (uv-vis absorbance, fluorescence, circular dichroism readings as a function of wavelength, temperature, or time) and facilitates basic operations such as unit conversion (CD spectra), conversion into the format taken by CDPro (estimation of secondary structure; CD spectra), scatter correction (absorbance spectra), smoothing, re-sampling of the x-axis, and generic combination (sum, product, average, standard deviation) of multiple curves. Spectral-SpecPro is based on earlier software written by Stephen R Martin (MRC-NIMR London NW7 and Francis Crick Institute London NW1).
    Downloads: 0 This Week
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  • 11
    Application to optimize DNA sequences coding protein to put in in the different organizm (f.e. human protein in E.Coli). It proposes the optimal cutting places to connect many shorter fragments into bigger one using ligaze.
    Downloads: 0 This Week
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  • 12

    MethyMer

    Design of specific primer combinations for bisulfite sequencing

    MethyMer is a Python-based tool aimed at selecting specific primers for amplification of complete CpG islands. These regions are difficult in terms of selection appropriate primers because of their low-complexity, polyN-, CG-richness, etc. MethyMer have a flexible scoring system capable of selecting primers in problematic regions (e.g. SpG islands) and includes specificity test (based on bowtie alignment against bisulfite-treated genome).
    Downloads: 0 This Week
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  • 13
    Antenna DTV
    Antenna, a free and open-source dvb-t (terrestrial digital tv) tuner for linux desktops. Antenna is a full featured tool to see what's going on in the sky. It enables you to scan, watch and record television, radio and services broadcasted on air.
    Downloads: 2 This Week
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  • 14
    FastVersion

    FastVersion

    FastVersion is a Qgis plugin for data versioning in a Postgis database

    FastVersion is a Qgis plugin for data versioning in a Postgis database. This plugin provides data versioning to tables with geometry stored in postgis. It allows to create, changes and eliminate versions, and within each version , to insert, modify and eliminate elements. It is possible carry out the processes of “post” from one version to another, with conflict resolution functionality. The system uses algorithms and data structures so that information is not duplicated each time a...
    Downloads: 0 This Week
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  • 15

    Pi-Trav

    An interactive pi walk.

    A simulation and visualization of random walks based on the digits pi. This program also has a settings menu.
    Downloads: 0 This Week
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  • 16

    PyVE

    PyVE is image analysis and visualization environment

    PyVE is image analysis and Visualization Environment focused at clinical use. At the core of it there is a powerful viewer for displaying 3D datasets (MRI, PET, CT) based on VTK. It all comes precompiled allowing painless access to Python (2.x), the ITK toolkit for image analysis, numpy/scipy for numerical calculations, Qt and PyQt4 for the development Graphical User Interfaces. It is what you need for fast prototyping and development of more complex projects.
    Downloads: 0 This Week
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  • 17
    C++ Standard Airline IT Object Library
    That project aims at providing a clean API, and the corresponding C++ implementation, for the basis of Airline IT Business Object Model (BOM), ie, to be used by several other Open Source projects, such as RMOL, Air-Sched, Travel-CCM, OpenTREP, etc.
    Downloads: 0 This Week
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  • 18
    Downloads: 0 This Week
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  • 19

    pyGerber2Gcode

    Python Gerber to G-code converter

    pyGerber2Gcode is a Pyhon based simple Gerber to G-code converter.
    Downloads: 0 This Week
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  • 20

    RTS2 - Remote Telescope System

    Open source observatory control software

    RTS2 is project to create an open source environment for control of a fully autonomous observatory. It is running about dozen fully autonomous observatories. Its modular design allow easily addition of new devices (to already huge supported HW list).
    Downloads: 1 This Week
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  • 21

    SnowyOwl

    RNA-Seq based gene prediction pipeline for fungal genomes

    ...SnowyOwl has successfully predicted genes in 26 novel fungal genomes. The pipeline can be installed locally for high throughput and control over configuration. It can also be run on a remote server through a convenient web interface for occasional use.
    Downloads: 0 This Week
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  • 22
    Gnuplot Editor

    Gnuplot Editor

    Interactive gnuplot script editor

    Ever needed to tweak a gnuplot script and got annoyed by constantly changing the script file, run gnuplot and display the resulting image? The gnuplot editor generates a preview of the plot for every change you make and quickly allows to show the created image file with a simple keystroke. Lines with errors are highlighted in the code and gnuplot output is shown in a separate widget. In addition it features all basic editor options, syntax highlighting and menu macros for often used...
    Downloads: 0 This Week
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  • 23

    RDRPOSTagger

    A Rule-based Part-of-Speech and Morphological Tagging Toolkit

    RDRPOSTagger is a robust, easy-to-use and language-independent rule-based toolkit for Part-of-Speech (POS) and morphological tagging. RDRPOSTagger obtains fast performance in both learning and tagging process. RDRPOSTagger also achieves a very competitive accuracy in comparison to the state-of-the-art results. RDRPOSTagger now supports pre-trained POS and morphological tagging models for Bulgarian, Czech, Dutch, English, French, German, Hindi, Italian, Portuguese, Spanish, Swedish, Thai and Vietnamese. ...
    Downloads: 0 This Week
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  • 24

    QSdpR

    Viral Quasispecies Reconstruction software based on QSdpR algorithm

    This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population.
    Downloads: 0 This Week
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  • 25
    Open Automation

    Open Automation

    Building automation (like KNX or OpenHAB) software (like CometVisu).

    This project aims to provide software usefull in automation tasks like building automation. Different backends are supported like KNX or OpenHAB. Note: The project has moved to GitHub. Please consult: https://github.com/CometVisu/CometVisu - for the CometVisu https://github.com/OpenAutomationProject - for the different OpenAutomation subprojects
    Downloads: 2 This Week
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