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Showing 512 open source projects for "can="
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1
DEBay
Deconvolutes qPCR data to estimate cell-type-specific gene expression
DEBay: Deconvolution of Ensemble through Bayes-approach DEBay estimates cell type-specific gene expression by deconvolution of quantitative PCR data of a mixed population. It will be useful in experiments where the segregation of different cell types in a sample is arduous, but the proportion of different cell types in the sample can be measured. DEBay uses the population distribution data and the qPCR data to calculate the relative expression of the target gene in different cell types in the sample. The user manual of DEBay: https://sourceforge.net/projects/debay/files/UserManual.pdf Sample data: https://sourceforge.net/projects/debay/files/Test_data/ Citation Information: Vimalathithan Devaraj, Biplab Bose. ... -
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Open Drug Discovery Toolkit (ODDT)
Modular and comprehensive toolkit for use in cheminformatics
Open Drug Discovery Toolkit (ODDT) is modular and comprehensive toolkit for use in cheminformatics, molecular modeling etc. ODDT is written in Python, and makes extensive use of Numpy/Scipy. You can use any supported toolkit united under common API (for reference see Pybel or Cinfony). All methods and software based on Pybel/Cinfony should be drop-in compatible with ODDT toolkits. In contrast to its predecessors, which were aimed to have minimalistic API, ODDT introduces extended methods and additional handles. These extensions allow to use of toolkits at all its grace and some features may be backported from others to introduce missing functionalities. ... -
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powerfactory-fmu
The FMI++ PowerFactory FMU Export Utility
...The FMI++ PowerFactory FMU Export Utility provides a graphical user interface (new in version v1.0) and - alternatively - Python scripts that generate FMUs from certain PowerFactory models. Additional files (e.g., time series files) and start values for exported variables can be specified. Currently, two types of simulations are supported: In quasi-static steady-state simulations a power system’s evolution with respect to time is captured by a series of load flow snapshots. RMS simulations allow to calculate the time-dependent dynamics of electromechanical models, including control devices (new in version v0.6). -
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pyPIDTuneMethods
PID controller design and tuning
...pyPIDTuneMethods is based on scipy (numpy, scipy) <http://www.scipy.org/ >, guiqwt <http://code.google.com/p/guiqwt/ >, python control <http://python-control.org/> and pyQt5 <http://www.riverbankcomputing.co.uk >. If you are not familiar with python you can use winpython <http://winpython.sourceforge.net/>. You can also download it from pypi <https://pypi.org/project/pyPIDTuneMethods/>. You may also just download the Excel file 'xlPIDTunemethods.xlsm' <https://sourceforge.net/projects/pypidtunemethods/files/xlPIDTuneMethods.xlsm/download> with the predefined tuning methods. Checkout the following youtube videos : PID Tune <https://youtu.be/9GAMoq5DDlc> -
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Molecular Dynamics Studio
Molecular Dynamics Cell Construction
...NanoEngineer-1 is a molecular CAD software written by Nanorex and provides the user an easy way to create molecules, while the software modifications allow the user to type atoms using multiple force fields. PACKMOL can generate a random collection of molecules using the molecule templates from NanoEngineer-1 thus providing the initial MD cell. Modifications to PACKMOL allow the atom type data to be passed through to the MSI2LMP software. MSI2LMP creates a LAMMPS input file based on class I or class II force fields. MSI2LMP was modified to use numerically coded force field data generated by NanoEngineer-1. ... -
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PyRobot
An Open Source Robotics Research Platform
...It was built to make research repeatable on accessible platforms—most notably low-cost mobile manipulators—while still scaling to richer hardware. The library exposes canonical abstractions (base, arm, gripper, camera, sensors) with calibration and kinematics helpers so beginners can get meaningful results quickly. It also plugs into simulation backends, letting you prototype perception and control algorithms before deploying on physical robots. By standardizing common operations and providing examples, PyRobot reduces boilerplate and encourages best practices in perception-control loops, data collection, and benchmarking. -
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Pikon-Stelarium interface
Pikon-Stelarium interface to use with azimuthal mount
This is a full project to make an software-drived azimuthal mount for the Pikon telescope, it can be use for others telescope. This project include : . Some other parts to print to adapt to the Pikon . Python code for raspberry Needed parts for "as it" use : . 1 Raspberry (model A suit well) . 3 motors steppers . 3 steppers drivers . 1 BNO055 (the one from adafruit was used) . 1 Pikon driver . 1 GPS module Sofware requirement : . raspbian . python 3 . some python libraries -
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CMD Plot Tool
Calculates and plots Colour Magnitude Diagrams from Astronomical data
CMD Plot Tool calculates and plots Colour Magnitude Diagrams (CMDs) from astronomical photometric data, e.g. of a star cluster observed in two filter bandpasses. It can handle multiple file formats (plain text, DAOPHOT .mag files, ACS Survey of Galactic Globular Clusters .zpt files) to generate professional and customised plots, without the usual steep learning curve. Development using Python, OOP and a formal software development lifecycle model (Agile) allowed for the creation of an application that can be deployed on multiple systems. ... -
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pyGear
Precise gear geometry generator for spur and helical gears
A python gear generator that serves as CAE/CAD-preprocessor for involute gears based on pythonOCC. It allows for the computation of dynamic properties and the creation of exact geometries from a minimal input set. PyGear can simulate the tool geometry and kinematics of standard gear hobbing tools to generate precise flank, tooth root and tip geometries. -
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10
CutePy
Lightweight Qt-based Python console with variable explorer and history
...Therefore its main aim is to start fast and provide more comfortable dealing with variables based on the Python language. However in the end it is a regular Python console and therefore can be used for almost any task. -
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plot.py
direct data plotting and evaluation
The Plot.py project tries to supply a measurement data visualization and treatment framework being easy to use while keeping the freedom for advanced users to execute additional data treatment algorithms. Plotting is done via gnuplot and the script used to produce the graphs can be exported for later use/changes. Many raw experimental data types (mostly of x-ray and neutron scattering experiments) are supported with more to be added on user request. The data treatment includes non-linear fitting, integration and differentiation, peak-finder and more. User python code can be executed in the integrated IPython console. -
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CHLone
CGNS/HDF5 compliant library
CHLone is a CGNS/SIDS compliant mapping on HDF5. You can read/write CGNS/HDF5 files and access to node through a C API interface or using a Python module. -
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Virtual Laboratory Environment
A multi-modeling and simulation environment to study complex systems
...VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical mathematical formalism: Ordinary Differential Equation with Euler, Range-Kutta or QSS integrator, Finite state automaton (FDDEVS, UML State chart, Hybrid Petri net). The VLE environment provides an IDE to develop C++ models, DEVS coupled models. VLE have also three ports to use the VFL with Python, Java and R programming languages. -
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TimingDrawer
Text based timing diagram generator
This tool generates timing diagrams for documenting hardware design. It reads the description from a text file with a simple syntax. It generates vector graphic (EPS, SVG or EMF format). It can be used in command line mode or with a GUI. It is written in Python and works on any platform. -
15
Nelder Plot Designer
A Computer-aided Tool for Nelder Plot Design
...The difficulties with Nelder plot design is their uncommon layout and complex parameterization (Parrott et al. 2012). This computer-aided tool for designing the Nelder plot can be very useful for the practical implementation of this experimental design.\r\n\r\nReferences\r\nNelder JA (1962) New kinds of systematic designs for spacing experiments. Biometrics 283–307\r\nParrott DL, Brinks JS, Lhotka JM (2012) Designing Nelder wheel plots for tree density experiments. New Forests 43:245–254. -
16
DACO-algorithm
A novel transcription factor complex prediction algorithm.
...The metric is locally maximized on the holistic level of protein interactions while sophisticated connectivity constraints on the domain level are utilized to account for the exclusive and thus inherently combinatorial nature of the interactions within such assemblies. The original publication can be found on http://bioinformatics.oxfordjournals.org/content/30/17/i415 . -
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Polluted gases Estimator
Create, estimate and analyses gas pollutants and the possible costs
The SPS machines are not designed to filter the particulates to be of acceptable size, level or concentration, unlike Wet Scrubbers, Electrostatic Precipitators, Diesel Particulate Filter DPF etc. The reality is that finest and ultra-finest Particulates tends to behave like gas rather than a gas-solids mixture or simply can be transported by vapour. Is the reason why many filtering technologies are ineffective. However, SPS technology is post-combustion system or last stage of production, which results in packaged CO2 or any other gases, without worrying about gas dilution and intrusion processes which more complicated and costly also are not well investigated, that is a setback for many CO2 technology. ... -
18
AESOP-ACP
A simulation framework for production process modeling in Python
...The basic goal of the simulator is to find bottlenecks in production process which could be hard to detect with traditional approaches (e.g., top-down). In addition, it can be used to speculate about “what-if” scenarios in order to suggest solution strategies. -
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PySptools
Hyperspectral algorithms for Python
...The functions and classes are organized by topics: * abundance maps: FCLS, NNLS, UCLS * classification: AbundanceClassification, NormXCorr, KMeans SAM, SID, SVC * detection: ACE, CEM, GLRT, MatchedFilter, OSP * distance: chebychev, NormXCorr, SAM, SID * endmembers extraction: ATGP, FIPPI, NFINDR, PPI * material count: HfcVd, HySime * noise: Savitzky Golay, MNF, whiten * sigproc: bilateral * sklearn: HyperEstimatorCrossVal, HyperSVC and others * spectro: convex hull quotient, features extraction (tetracorder style), USGS06 lib interface * util: load_ENVI_file, load_ENVI_spec_lib, corr, cov and others The library do an extensive use of the numpy numeric library and can achieve good speed. The library is mature enough and is very usable even if the development is at a beta step. -
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Awesome Math
This is the Curriculum for "How to Learn Mathematics Fast"
...The materials emphasize short, high-leverage resources—video lectures, concise notes, and hands-on exercises—that help you build momentum quickly. It also suggests checkpoints and practice ideas so you can test comprehension and move forward with confidence. The structure is useful both for newcomers who want a starting plan and for practitioners filling specific gaps before tackling ML or deep learning. Overall, it acts as a compact study plan that turns “learn math” from a vague goal into a concrete, achievable path. -
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Charting tools, backtesting tools, and data visualization tools for the most popular cryptocurrencies.
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MIPPY
Modular Image Processing in Python
MIPPY is a minimalistic DICOM image browser with built-in image processing modules. Its modular design means it can be extended with any number of user-created modules for image processing and analysis. -
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pyNETVARS
Python module for network variables for CoDeSys PLCs
...Blocks of (global) variables, that propagates over networks like TCP, UDP or UDP Multicast aso. This python module supports parsing, receiving and sending those blocks (with UDP Multicast only). With this you can add for example a Raspberry Pi Sensor to your automation network without special Network clients on your PLC. -
24
Qutranpy
Interactive electronic quantum transport
Interactive program to perform quantum transport calculations by means of the Landauer and scattering matrix formalism, in a two terminal geometry. The Hamiltonians of leads and scattering region can be modified, adding exchange fields, mass, spin-orbit coupling or superconductivity. -
25
Quantum Honeycomp
Interactive program to calculate electronic properties in graphene
...The code uses the tight binding approximation and it is able to stude in a 0D, 1D and 2D geometries, orbital and magnetic fields, intrinsic and extrinsic spin-orbit coupling, sublattice imbalance, and interactions at the mean field level. The most recent version can be found in https://github.com/joselado/quantum-honeycomp Example videos https://www.youtube.com/watch?v=8gO1yRmwgAs https://www.youtube.com/watch?v=FQlkqAW7Nhs https://www.youtube.com/watch?v=R7Kt3_DHTtM https://www.youtube.com/watch?v=tQKG_h0FaTM
