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Crawl websites, sync to vector databases, and power RAG applications. Pre-built integrations for LLM pipelines and AI assistants.
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DANGLE: A Bayesian inferential prediction method for protein backbone dihedral angles and secondary structure assignments, solely from sequence information, experimental chemical shifts and a database of known protein structures and their shifts.
Diamond is a confocal scanner written in python / Qt4. It combines an intuitive gui with flexible hardware abstraction classes. It is directed primarily towards quantum information processing (QIP) with single NV centers in diamond.
A cross-platform library that computes fast and accurate SIFT image features. libsiftfast provides Octave/Matlab scripts, a command line interface, and a python interface (siftfastpy). Optimized with SIMD instructions and OpenMP .
It's a modern take on desktop management that can be scaled as per organizational needs.
Desktop Central is a unified endpoint management (UEM) solution that helps in managing servers, laptops, desktops, smartphones, and tablets from a central location.
BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale.
Programs to download and work with satellite measurements, calculate solar wind (SW) propagation time and compare data to other satellites. It uses and compares different modern techniques to determine the SW planar structures orientation.
Improved version of the LibNumTh library (http://libnumth.sourceforge.net/), reimplementing
its methods to work concurrently in a SMP environment.
In addition, it is extended with support for linear algebra and numerical methods mechanisms.
RADAR stands for Rapid Automatic Detection and Alignment of Repeats in protein sequences. RADAR identifies gapped approximate repeats and complex repeat architectures involving many different types of repeats.
Radar has moved to github (https://github.com/AndreasHeger/radar)
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A simple project which attempts to emulate real life in the launching of a trebuchet. Requires a python compiler, and the python modules for math, gtk, pygame, random, and numpy. Please note: this is an early version and is in alpha.
A HTML scraper that uses machine learning frameworks to extract labelled fields from raw HTML. The project also involves the development of a tool to display the semi structured data generated by the scraper component.
Spyse is a software framework for building multi-agent systems. It allows Python developers to build distributed intelligent systems of multiple cooperative agents based on FIPA, OWL, SOA and many others. Spyse is designed for ease-of-use and fun.
FociCounter is a simple and user-friendly program for analysis of gamma-H2AX foci. It allows to determine the number of foci in a single cell, a foci intensity as well as a cell intensity.
A colorized interactive dotplot program designed for pair-wise comparisons of RNA & DNA. The original idea was from the mind of late Prof. William J. Dreyer of Caltech. The idea is to be able to see the "tapestry" of life, which comes alive with color.
AudioSavant is a music visualization software that is aimed to allow students to get a better understanding of music. It is based in the OLPC's TamTam application, with a set of modifications from the information visualization world.
The aim of project is creating program environment for solving some integral equations, arising at solving mathematical problems of the diffraction theory.
ConDEnSE (Confidential Data Enabled Statistical Exploration) will be a web-based environment for statistical analysis of confidential data from various database sources, based on Plone and R, and using the Jackknife method of confidentiality protection.
MATmute is a MATLAB code mutation system targeted at developers of scientific software. The package includes a mutator, a MATLAB function to call the mutator and run the mutants, and some examples to demonstrate how to use the system.
Use SASSIE to generate and manipulate large numbers of molecular structures and then calculate the SAXS, SANS, and neutron reflectivity profiles from atomistic structures. Use for intrinsically disordered proteins. We need alpha-testers and developers.
Use of USB to Serial and USB to Parallel BUS CONVERTERS available from ElectronicBRICKS at http://electronicbricks.blogspot.com/search/label/usb-Brick.
The scikits.timeseries python module provides classes and functions for manipulating, reporting, and plotting time series of various frequencies. The focus is on convenient data access while leveraging the existing functionality in numpy.
The project holds the files for the Explorer Post 6201 Programming in Python project. The project for 2006 is an information organizer (final name TBD).