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The OpenFire processor is a Xilinx MicroBlaze-compatible processor being modified for use in Cyber Physical Systems research. This material is based upon work supported by the National Science Foundation under Grant No. CPS-0932113.
CellPublisher is a free, open source program to improve the navigation of biological pathways. It converts CellDesigner diagrams into fully-featured maps that live inside a browser. The navigation is based on the Google maps API.
SynBioLib -- your toolkit for synthetic biology applications. SynBioLib aims to establish a platform on which the Synthetic Biology community can develop and share code that is common to many tasks and programs.
BS Eagle Project is an open source black-oil simulator. The goal of this project is to provide a free access to the modern oil simulator to study new methods of simulation. The project has a modular architecture and open to modifications and extensions.
ngram is a module to compute the similarity between two strings. It is different to python's "difflib.SequenceMatcher" in that it cares more about the size of both strings. ngram is an port and extension of the perl module called "String::Trigram
RefineHMM refines an original hidden Markov model (HMM) to find an optimal fit
against the evolutionary group that the HMM models, and it does this using
through iterative database searches and incremental subsequent adaptation of
the seed set.
PyCV is a Python package of modules useful for computer vision tasks. Its current focus is on boosting techniques, Haar-like features, and face detection. PyCV provides the world's fastest method for training a face detector, in a few hours.
This project contains tools, that were created during the work with the Katana robotic manipulator at the workgroup EOS of the University of Magdeburg.
Bender is a project intented to cover a complete UAVs system. The projects consists in three parts: the UAV Embedded software (Bender), the Control station software (Fry) and the communication protocol between UAVs and Control Station
A Python environment for large and sparse linear and nonlinear optimization using intuitive interfaces to linear algebra tools and subproblem solvers written in low-level languages. It provides building blocks to experiment with new ideas and algorithms.
Ouroborus is an artificial life framework for mobile agents on a background of cellular automata. It can be used to teach and research topics such as population genetics, ecology and evolution. The demo includes a curses view and live Csound audio.
Shared Substance is a programming framework and middleware for developing distributed interactive application. The environment written in Python, operating on the data-oriented programming model.
The Virtual Collaboratory provides mechanisms for users to exchange information, data, on-line resources, and ideas. In a collaboratory, individuals from different locations are able to work together using VoIP, document exchange and other features
A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
FAUNUS is an object oriented class library for molecular simulation, written in C++. It contains routines and utility programs for, Metropolis Monte Carlo sampling (NVT, NPT, NmuT ensembles), Macromolecules, Proton Titration, Widom Analysis etc.
NeuraPy is now hosted on github
This is a collection of Python modules that read files encountered in neuroscience experiments. Included are modules to read lablib files and modules to read Cyberkinetics Cerebus system .nev and .ns3 files
Little Cohesion Helper (LCH), alias TraglWeck, semi-automates the annotation of lexical-cohesion in a given text. Input is a raw text file and this software generates a bunch of XML files which can be used with MMAX2.