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BoulderALE is an RNA alignment editor, which allows for the annotation of basepairs, annotation and collapsing of features (horizontal) and sequences (vertical), along with 2D display of sequences and base composition given a secondary structure.
This project is a complete cross-platform (Windows, Linux) framework for Evolutionary Computation in pure python. See the project site at http://pyevolve.sourceforge.net or the blog at http://pyevolve.sourceforge.net/wordpress
Non-stealth keylogger for Windows. Records mouse and keyboard (precision~10-15ms), log of events (disk size~2.5k/s) + log of operations (~ 0.2k/s). Standalone, with local copy of Python: unzip to install, delete to uninstall.NEW: hidden/visible icon
Wizard-like software to run experimental procedures (at large). Each step of the procedure is a file (document, on-line form, checklist, video, program... ). Experimental data and documents are backuped together. NEW: templates of procedures
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ECMWF parser is a software made in python (it has a version standalone and another python dependant) to work on the data provided by ECMWF. It uses WGRIB to convert binary data to ascii and operates over the last with several functions available.
Java based multi-agent platform built on an organizational model (agent, group, role). MadKit provides general agent facilities (lifecycle management, message passing, distribution, ...), and allows high heterogeneity in agents.
GraphicalOSfp is a python application which aims to collect random data issued by remote systems in IP and TCP sequences. These data are then displayed in a 3D referencial to highlight an attractor of the random engine of the remote machine.
FONZIE is a bioinformatic tool written in Python developed for the genetic cartography speciality. FONZIE allow as well to find markers on a set of sequences than to find associate oligonucleotides. http://www.biomedcentral.com/1756-0500/3/322/abstra
Open source, cross platform drivers and function library for the NovInt Falcon Haptic Controller. These drivers are not produced by Novint Technologies, Inc. and do not come with any warranty as to their correctness or usage.
This is a fast C implementation of Arturo Camacho's SWIPE' pitch extraction algorithm. See the project homepage for more about the advantages of the SWIPE' algorithm. swipe-1.0.tar.gz contains the current source, which should compile quite neatly.
LaserFoam performs simulations of laser pulses using an adaptive split step Fourier method to solve the generalized nonlinear Schrödinger equation. It provides a graphical environment to run and visualize the results.
pyFoam is a Python front-end to the OpenFOAM (Open Source CFD Toolbox). It introduces interactivity into OpenFOAM, simplifies connection with third-party functionality and streamlines design of custom user solvers
PyQwt = FAST and EASY data plotting for Numerical Python and PyQt.
PyQwt is a Python wrapper for the Qwt C++ class library which extends the Qt framework
with widgets to display and control data for scientific and engineering applications.
Please note: We moved RCS, future releases, BUGS to https://github.com/PyQwt
--UPDATE-- New Version is now integrated in the official PyMOL plugin repository! --UPDATE--
The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands.
In Systems Biology models are created in various formats (Matlab, Java, C/C++, Python, ...). "Annotate Your Model" will help you to link your model to biological web resources by creating a CSV file containing MIRIAM annotations.
Data mines the voting record and other actions of Members of the UK Parliament. Extracts information from the parliament website and stores it in a database. Provides tools to analyse the information, producing statistics and tables about the MPs.
RefineHMM refines an original hidden Markov model (HMM) to find an optimal fit
against the evolutionary group that the HMM models, and it does this using
through iterative database searches and incremental subsequent adaptation of
the seed set.
This is a set of Python classes that can be used to simulate dynamic multi-body systems. It used to be a project for studies. Now it is not being worked on anymore, but it is completely GPLized.