Search Results for "compiler python linux" - Page 20
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Showing 2058 open source projects for "compiler python linux"
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P3BSseq
Parallel processing pipeline for analysis of bisulfite sequencing data
Bisulfite sequencing (BSseq) processing is among the most cumbersome next generation sequencing (NGS) applications. Though some BSseq processing tools are available, they are scattered, require puzzling parameters and are running-time and memory-usage demanding. We have developed P3BSseq, a parallel processing pipeline for fast, accurate and automatic analysis of BSseq reads that trims, aligns, annotates, records the intermediate results, performs bisulfite conversion quality assessment,... -
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wirecutter plugin for inkscape
This plugin exports G-Code for a wirecutter
The "wirecutter" plugin for inkscape is a plugin to generate g-Code for a 2D wirecutter with a turning table. You can either draw one open path which is the path which the machine will cut or you can draw some closed paths. These closed paths (e.g. Letters) must be connected because the cutter cannot leave the raw material like a milling machine. The Plugin helps you to create these connectors. If you have a wirecutter with a turning table you can create multiple "cuts" for... -
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PyQuante (Python Quantum Chemistry) is an open-source package for quantum chemistry programming written in Python, Numerical Python, and C.
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Leave A Trace Tools
Tools for reading the track data of the project "Leave a Trace"
The art project "Leave a Trace" (LAT) records an displays people movement in real time. It is installed as a permanent exhibition within the Charité in Berlin, Germany. Please find more Details about LAT here: https://leave-a-trace.charite.de/action This sourceforge project provides python tools to read the raw XML data produced by LAT. The data reading module works with python2 and python3. LAT XML Data can be downloaded here: https://leave-a-trace.charite.de/action -
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GPSFileViewer
Application to browse and visualize your GPS files
...., speed, elevation, hill gradient) * Quickly determine distance and duration for portions of tracks by mousing or dragging in the graph. Use this to see exactly how different routes compare in time and distance Written in WxPython+Matplotlib. Windows executable available; Mac and Linux can be run via script. -
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cphcttoolbox
Cph CT Toolbox is a selection of Computed Tomography tools
Copenhagen Computed Tomography Toolbox is a collection of applications and libraries for flexible and efficient CT reconstruction. The toolbox apps generally take a set of projections (X-ray intensity measurements) and filter and back project them in order to recreate the image or volume that the projections represent. The project includes both mostly informative CPU implementations and highly efficient GPU implementations. Regular releases are hosted at the Python Package Index. -
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PAGC is a command line and web service C library for performing postal address geocoding. A postal address geocoder takes a sufficiently detailed postal addresses and produces a digital map that displays the spatial location of those addresses.
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PyVib2 is a program for analyzing vibrational motion and vibrational spectra. It is an open source "all-in-one" solution for scientists working in the field of vibrational spectroscopy (Raman and IR) and vibrational optical activity (ROA and VCD).
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DCMLinux - Dicom Linux Distribution
Dicom PACS solution for free.
DCMLinux is a complete PACS system, free of charge. Its core is an Ubuntu 14.04 system fully updated and it contains the DCM4CHEE as its PACS server. In the near future it will contain many other addons such as Weasis, Oviyam, Care2x, etc. Just download the iso, burn it to a CD and boot it up. No need to configure any files of dcm4chee, DCMLinux installer asks for everything it needs to configure a running PACS in minutes. Project Wiki : http://wiki.dcmlinux.org Project Forums:... -
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converts a SAM file to fasta file. SAM file is a file output from bwa alignment software. It outputs aligned fasta file.
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pySimiam
Robot simulator inspired by Sim.I.Am
PySimiam is a robot simulator, created to follow the course "Control of Mobile Robots" offered at Coursera. The simulator models an arbitrary number of mobile robots in a 2D environment, each controlled by a arbitrary algorithm. -
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are... -
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MerDAQ
A DAQ solution in Python 2 for your Ardruino
MerDAQ is a data acquisition GUI and other tools for collecting and storing time dependent. Originally designed to collect 4 temperature data vs. time and plot one of the temperatures in real time with matplotlib. Ideal for use with Arduino. -
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YoMo
You Only Meter Once - The open hardware smart metering system
Researches have shown that immediate feedback can increase energy saving dramatically. YoMo aims to empower people using low-cost open hardware smart meters in their household. The metering system consists of a coordination unit, a raspberry pi, and several smart meters, arduino boards equipped with communication shields and our self-designed yomo metering shield. The smart meters are attached to household devices and monitor their energy consumption. The gathered data is timestamped and... -
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The complexity of cellular networks is an outstanding challenge for documentation, visualisation and mathematical modelling. In this project, we develop a new way to describe these networks that minimises the combinatorial complexity and allows an automatic visualisation and export of mathematical (ODE/rulebased) models.
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pyhard2, control hardware from python
An object-oriented framework for the development of instrument drivers
pyhard2 is an object-oriented framework to help in the development of instrument drivers. pyhard2 is proposed as an alternative to LabVIEW. Emphasis is given on serial drivers but the framework can be used with any socket. The source also contains the implementation of a PID controller and a setpoint ramp generator. The instrument drivers may further be incorporated in a GUI, using, e.g. PyQt or PySide. Threading is automatically taken care of. Furthermore, generic GUI (called... -
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pyxaid
PYthon eXtension for Ab Initio Dynamics
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WavePacket
Dynamics of quantum systems, controlled by external fields
... in photo-induced physics or chemistry, including quantum optimal control. With its visualization of quantum dynamics generated 'on the fly', WavePacket is suitable for teaching quantum mechanics as well as for research projects, see also the numerous demonstration examples . While the Matlab/Octave version is already in a mature state, the C++/Python version is still under construction. Using tensor train techniques, the additional WaveTrain package aims at beating the curse of dimensionality. -
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LOOS
Analyze molecular simulation data
LOOS is a light-weight object oriented software library for creating new tools for analyzing molecular simulation data, written in C++. The main design goal is to allow casual programmers to easily implement new analysis methods. THIS PAGE IS NO LONGER UPDATED. Please see https://github.com/GrossfieldLab/loos for all recent developments -
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PhaseSpace
Analyse dynamical systems, plot its phase space and critical points.
Phase Space is born out of the need of a simple yet powerful open source tool to study dynamical systems. PhaseSpace allows you to plot the phase space of the dynamical system you are studying, its critical points and the curves of slope zero and infinite.It can also plot the solutions of the system and it's vector field. To use PhaseSpace you'll need to have Python installed along with Matplotlib and Numpy. -
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VisTrails is a new scientific workflow management system developed at the University of Utah that provides support for data exploration and visualization. Written in python, it has a visual programming interface for many libraries, including VTK.
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BayesRate
Bayesian estimation of diversification rates
BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework. The methods are described in: Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311 Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175. -
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What is MedSquare about? Our aim is to create a powerful and flexible modular environment for exploration of medical images, for both medical and scientific purposes.
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dxf2pcb
Convert DXF drawings of circuit boards to gEDA-PCB files.
This Python script reads in a DXF (ascii) file and generates a PCB output compatible with PCB Designer, part of the gEDA suite. It is designed for two purposes: One is to generate a PCB snippet from a mechanical drawing (such as a board outline), the other is to produce element files from CAD drawings. PCB snippets are easily imported into an existing gEDA-PCB project using File -> Load Layout to Buffer. Generated element files are ready to use (except for special cases like no-paste flags... -
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Toastpp
Forward and inverse modelling in optical tomography
Toast++ is a C++ software package for modelling light transport in scattering media using the finite element method. It allows 3D reconstruction of absorption and scattering distributions inside an object from boundary measurements of light transmission, using steady state, time domain or frequency domain information. Matlab and Python bindings exist for ease of use and fast prototyping.
