Search Results for "program files" - Page 2

...ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract

FABS is a program designed to run a fluorescence/absorption spectrometer on Windows. The program analyzes spectra and provides graphs and data files. Users may choose to input video files from cell phones or other cameras, still images, or even live streams of video from webcams. FABS can perform any necessary calibration and image preprocessing.

miRStat enables identification of regulatory microRNA targeting several genes in a custom gene group. This Python application is based on the TargetScan 6.2 microRNA target prediction data. Conserved and Nonconserved site context+ scores files are required (unzip and place to directory with program). Available at http://targetscan.org/cgi-bin/targetscan/data_download.cgi?db=vert_61

SAMoCAD - its program to create simple drawings, partially supports DXF. Main features: - create simple objects (line, arc, circle) - create complex objects (text, dimensions) - edit drawn objects - save drawing to SVG format - output drawing in PostScript format - export/import content DXF files (primitives LINE, CIRCLE, ARC, TEXT, DIMENSION) Program written in Python 2 and use the library Tkinter.

Latest on Arxiv is a program/script with a simple job to do. Every day, it will download all pdf files from your favorite Arxiv RSS, and will then scan it to see if any authors from your favorite institute(s) are on there. If so, it will save the resulting index. The matched files are then parsed into a short list, featuring only the latest 4 preprints (which is ideal for a single TV screen in the coffee corner), and a long list which contains every paper in a clickable way. ...

This program can make histograms, table and graphics of datas, study the error propagation during a measure, it is usefull if you have to do study errors propagations. The output are latex files, so it is easy for you just put them into your relations.

...SCons rule sets are Python scripts so as well as the features it provides itself SCons allows you to use the full power of Python to control compilation. This is a SCons extension (tool) which enables usage of the dvipdfm program to convert dvi files to pdf.

Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no

This is an automatic spike detection program which takes account of probe geometry and produces a .mask file to be used with the new masked version of KlustaKwik. We recommend you use Python 2.6 or 2.7, e.g. a free academic version can be obtained from Entthought Python. The input files for SpiKeDeteKt are: .dat (raw data file) .probe (probe file, described below - user constructed) parameters.py (optional - otherwise it uses defaultparameters.py) SpiKeDeteKt outputs the following files: .fet.n (feature file) .mask.n (needed for using the new (masked) KlustaKwik) .clu.n (a trivial clue file where everything is put into a single cluster) .fmask.n (trial - float masks instead of binary, we are using this for testing masked KlustaKwik) .spk.n (spike file) .upsk.n (unfiltered spike waveform) .res.n (list of spike times) .xml (an xml file with all the parameters that can subsequently be used by neuroscope or klusters) .fil (highpass filtered data) .h5 (

Free and open source standalone program capable of conducting between, within, and mixed analyses of variance (ANOVA). Provides a simple graphical user interface for specifying analyses and interaction plots (analyses performed by http://code.google.com/p/pyvttbl/). Features: - Capable of high order factorial designs (> 2 factors) - Within and mixed analyses of variance provide corrections for violations of sphericity (Huynh-Feldt, Greenhouse-Geisser, Box) - A variety of data transformations can be applied (log10, reciprocal, arcsine, square-root, and Windsor) - Generalized eta-squared measures of effect size - Post-hoc power analysis (should match G*Power) - Outputs include tables of estimated marginal means - Up to 4-way interaction plots with errorbars (png, svg) - Confidence intervals account for within-subject variability (where applicable; Loftus and Masson, 1994) - Non-proprietary HTML output files - Non-proprietary codebase Gotchas: - Assumes balanced designs

UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An...

This program was written to dimonstrate errors in transmission for a presentation on Claude Shannon's Noisy Channel Coding Theorem. It takes an input file, the probability of a bit being flipped, and, if specified, the size of the header of the file. The program was intended to take monochrome bitmap files as input, so that each bit refers to a pixel in the image and thus, it would be easy to see errors in the output file, as some of the pixels would be flipped; however, it will work on any input file.

Wizard-like software to run experimental procedures (at large). Each step of the procedure is a file (document, on-line form, checklist, video, program... ). Experimental data and documents are backuped together. NEW: templates of procedures

HaxHexEditor is a file search system which search into multiple files (batch) with multiple definable searchstrings. The searchstrings can be specified by multiple wildcards. The search results will be exported in the HexWorkshop .HBK format

Python program for fitting rate constants to primarily kinetic data as 1st or 2nd order kinetics or autocatalysis. It also allows specific noise cancelling, data smoothing by fourrier transform, box averaging and flowing mean. For Python 2.6 or earlier.

This program is a User Interface to run command-line applications in any python-enabled system. Batch execution is available for files in a folder or in subfolders.

Simple CAM program for creating RS274NGC gcode from vector format files like DXF CF2 PLT. Can be used with AXIS interface from EMC project. It's early alpha stage.

StormSiren is an Internet application that allows individuals to receive alert notifications via Email, SMS, Jabber Instant Messaging, playing sound files, external program execution, MythTV visual alerts, and OSD (On Screen Display) visual alerts of wea

Benetech Human Rights Program Utility Library: Collection of utilities used by the Benetech Human Rights programming for processing human rights data in preparation for statistical analysis. Library handles DSV files, name canonicalization, binarray, et

This program will calculate and output metrics on code written in Python. Reports can be generated in text- or XML-files. A plug-in system lets new metrics be added to the program. A set of built-in plug-ins with provide some of the most common metrics a

Written in C++, IFI-picloader is a US First Competition Linux port for Innovation First Inc. Robot Controller programmer using a pic 18F8520. It writes MCC18 compiled hex files to PIC and allows users to program under *nix based operating systems.