Search Results for "mii-tool" - Page 2
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Showing 289 open source projects for "mii-tool"
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Fastq-Fasta Converter
A bioinformatics tool that converts Fastq into Fasta
Fastq-Fasta Converter is a desktop application that converts Fastq files into Fasta files. -
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ANYstructure
GUI based steel structure calculation and optimization tool.
GUI based steel optimization tool for naval architects and structural engineers. Calculate and optimize the following: Minimum plate thickness (DNV/DNVGL-OS-C101) Minimum section modulus of stiffener/plate (DNVGL-OS-C101) Minimum shear area (DNVGL-OS-C101) Buckling (DNVGL-RP-C201) Fatigue for plate/stiffener connection (DNVGL-RP-C203) Compartments (tank pressures) are created automatically. -
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GromacsProSuite
Graphical User Interface for Gromacs
This tool is an integrated graphical interface that simplifies molecular dynamics simulations using Gromacs. It provides a structured, tab-based environment to set up, execute, and analyze simulations data without complex command-line operations. The software automates tasks such as topology generation, solvation, ion addition, minimization, equilibration, and production runs while executing GROMACS commands in the background. -
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Tellurium
Model, simulate, and analyze biochemical systems using one tool.
Tellurium (te.) is a Python environment supporting Spyder2 IDE and Jupyter Notebook aimed for large-scale systems and synthetic biology simulation. It combines a number of existing libraries, including libSBML, libRoadRunner (including libStruct), libAntimony, and is extensible via tePlugins. In addition other tools kits such as matplotlib and NumPy are used to provide additional analysis and plotting support. -
Secure File Transfer for Windows with Cerberus by RedwoodCerberus supports unlimited users and connections on a single IP, with built-in encryption, 2FA, and a browser-based web client — all deployable in under 15 minutes with a 25-day free trial.
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ChemCrow
Chemcrow
...It integrates AI models with chemical knowledge bases to provide intelligent recommendations for synthesis planning, reaction prediction, and material discovery. This tool helps automate and accelerate research in computational chemistry and drug development. -
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DataPrep
Python-based data preprocessing tool
DataPrep v0.2 is a Tkinter-based GUI application/tool designed to assist users in data preprocessing, multicollinearity removal, and feature selection for a wide range of applications in Cheminformatics, Bioinformatics, Data Analysis, Feature Selection, Molecular Modeling, Machine Learning, and Quantitative-structure-property relationship (QSPR) studies. It includes functionality to load, process, and save datasets with support for different preprocessing & multicollinearity removal strategies with customizable parameter setting options. -
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SDF Merger
Desktop application for merging multiple SDF files into a single SDF
...Chemistry Library: RDKit for chemical data processing 4. File Formats: Input/Output in SDF format Citation Md. Ismiel Hossen, A. (2026). SDF Merger: A Desktop and Web Tool for Merging Chemical Structure Data Files (v1.1). Zenodo. https://doi.org/10.5281/zenodo.18291398 -
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CAIRO for AERMOD
AERMOD, visualisation, input, modelling and compiling tool
CAIRO for AERMOD v1.1 by MSc Dominik Subotić Simplified training software Avaliable: www.sourceforge.net/projects/cairo-for-aermod/ QGIS plugin: CAIROforAERMOD (Coming 2025.) Tutorial: https://www.youtube.com/watch?v=DZnsJuu1zLc AERMAP, AERMOD and AERPLOT analysis tool and input file compiler. Features: Automatic input by copying coordinates (Google Maps or text) and automatic conversion to UTM. Sources are automatically visualised in Google Earth. Input is done through user interface and automatically compiled into correct syntax and project/file structure. Windows application, supports up to 3 averaging periods, maxtable, maxifile, rankfile and plotfile. ... -
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Abacus software
Software to control and analyze Tausand Abacus coincidence devices
Abacus Software is a specialized tool for controlling and analyzing Tausand Abacus devices (AB1002, AB1004, AB1502, AB1504, AB2502, and AB2504). It enables precise measurement of temporal coincidences with up to 2-nanosecond resolution, and real-time visualization of count data from one, two, or three channels simultaneously. The software includes advanced features such as adjustable line width, sampling time configuration, direct device settings control, and the ability to save both raw data and graphical outputs for later analysis. ... -
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SIREN
Renewable Energy Network tool
SIREN demonstrates how electricity demand may be met by a mix of renewable energy sources. Users explore potential location and scale of renewable energy sources (stations, storage, transmission) to meet electricity demand. SIREN allows you to build scenarios for the energy mix for your area of interest. It is based around the map of your chosen area and allows you to visualise the layout of the existing electricity network plus the additional stations you place on the map to build your... -
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STRIKER-GUI
Refine the spectral library to enhance its completeness and coverage.
STRIKER is a tool for correcting spectra with missing or incorrect adduct annotations. It also enables efficient construction of an HMDB-based spectral library and extraction of sublibraries from large spectral libraries. -
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Baya - SoC Integration Platform
Best in class SoC Integration Platform, IP-XACT, Verilog VHDL, UPF
1. Comes with 200+ high level Tcl commands around SoC platform assembly 2. Easy to start - use the verilog2baya tool to convert existing SoC/SS into Baya 3. Adhoc and Interface based connections 4. Autoconnections 5. Rule based connections between component ports 6. A variety of SoC integration Methodologies 6.a. XLS/CSV Based connections 6.b. Port-to-Port Adhoc connections 6.c. IP-XACT and System Verilog Interface based connections 6.d. ... 7. -
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Color to Word
Turn colors into words
...The colors were obtained through a modified version of the program "Text to Color" by same author, available for download on GitHub and SourceForge on the profile page of Fonazza-Stent. The next version (coming soon) will include a tool to convert a custom word list into a word+color list named wordcolor.txt -
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RSM
Radiation Spectrum Method : a modal BPM (Beam Propagation Method)
RSM (Radiation Spectrum Method) is a 2D rigorous tool to solve the Maxwell equations for the propagation of light in integrated optics or photonics devices. It makes use of an EigenMode Expansion method (EME) to solve the electromagnetic problem. This software running on Windows and MacOS comes with a GUI that permits to define with the aid of files or scripts the arbitrary and complex geometry of the waveguide. -
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Advanced Trigonometry Calculator
Precision Trigonometry: Advanced Calculator for Complex Math
Advanced Trigonometry Calculator is equipped with a user-friendly interface that allows for easy input of problems and instant computation. Professionals such as engineers who need to perform advanced trigonometric calculations in their work will find this tool extremely useful. ATC Online Alpha: https://advantrigoncalc.sourceforge.io/atc/ More info by clicking below: https://advantrigoncalc.sourceforge.io/ Advanced Trigonometry Calculator was only and always only developed by the Portuguese Renato Alexandre dos Santos Freitas. Also author of poems, reflections and thoughts published on the platform https://www.pensador.com/autor/renato_alexandre_dos_santos_freitas/ ATC is Made in Portugal. ... -
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PI-Based Image Encoder / Converter
Python code able to convert / compress image to PI (3.14, π) Indexes
Image processing tool that encodes pixel data as indices within the first 16.7 million digits of PI (π). Features high-performance Numba-accelerated search and a signature 'film-grain' aesthetic upon reconstruction. ZIP also include 16 MB file with 16,7 mil numbers of PI Benchmark(Single-Thread): Hardware & Environment Apple Silicon: Apple M2 (Mac mini/MacBook) x86_64 Platform: Intel Core Ultra 5 225F (Arrow Lake, 10 Cores) OS 1: Fedora 43 (GNOME) OS 2: Windows 11 Pro (23H2/24H2) Software: Python 3.14.3 + Numba JIT (latest) Results (Lower is better) Platform / OS CPU Time (Seconds) macOS (Native) Apple M2 52.151311 s (in default setup) Fedora Linux Intel Core Ultra 5 225F 58.536457 s (in default Power Management: Balanced) Windows 11 Intel Core Ultra 5 225F 59.681427 s (important! ... -
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IP-XACT 2009/2014 Platform
Smart GUI/Commandline tools to create IP-XACT( 2009/2014) files
...ipxact2verilog - Generate Verilog module from IP-XACT definition ipxact2vhdlentity - Generate VHDL entity from IP-XACT Component definition verilog2ipxact - Generates IP-XACT definition from Verilog modules vhdl2ipxact - Generates IP-XACT definition from VHDL source ipxactcoherencycheckerverilog / ipxactcoherencycheckervhdl - Validates IP-XACT Component definition with RTL validateipxact - IP-XACT Linting tool -
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SecurePose
Automated Face Blurring, Kinematics Extraction and Leg dystonia Dx
SecurePose, an open-source software, automates face blurring, human movement kinematics extraction and leg Dystonia diagnosis. The software provides clinical-grade face blurring with minimal manual effort. It was validated on videos recorded in clinical settings. The tool employs pose estimation to track and uniquely identify individuals, recognize patients, perform effective face blurring, and identify leg dystonia. SecurePose surpassed six existing methods in automated face detection and blurring and outperformed human performance in leg dystonia identification. This validation establishes its effectiveness and usability in clinically recorded gait videos for face blurring and kinematics extraction. ... -
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Tokenized Text Aligner
Aligns tokens in two versions of a text with differing tokenization.
This tool performs token-by-token alignment of two versions of a text with differing tokenization by interpreting the results of a file diff (https://docs.python.org/3/library/difflib.html). It is intended for use in the preparation of annotated linguistic corpora, where differences in tokenization may arise (i) following corrections or modifications to the source text or (ii) through the creation of different layers of annotation (part-of-speech, treebank) requiring different tokenization. ... -
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LibrePLM
LibrePLM integrates CAD editors in Odoo / LibrERP
...Reduce time to market, improve your business and avoid trivial errors. Server New Release : 2025 Q3 - Release on Odoo version 19.0. Client New Release : 2026 Q1 - Added Draftsight integration. Supported: Windows 11. Added new tool GetNodeID to help you asking activation code. Have more info : https://sourceforge.net/p/libreplm/wiki/Home Odoo is a product of Odoo SA world class leader in Open Source ERP system. Visit: http://www.odoo.com LibreERP and LibrePLM are products of Codebeex srl. Visit: http://www.codebeex.com Download Free Trial Client. ... -
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LabRPS
Random phenomena generator
This is an official mirror of LabRPS. Code and release files are primarily hosted on https://github.com/LabRPS/LabRPS and mirrored here LabRPS aims to be a tool for the numerical simulation of random phenomena such as stochastic wind velocity, seismic ground motion, sea surface ... etc. It can be in a wide range of uses around engineering, such as random vibration or vibration fatigue in mechanical engineering, buffeting analysis in bridge engineering.... LabRPS is mainly to assist reseachers in related fields to quickly implement new simulation methods programmatically in their new research work based on the existing works, help engineers to numerically generate random phenomena in a more realistic way, helps students and new comers to this field to learn quickly. ... -
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sequoia-dap
SEQUOIA ocean data assimilation platform (a SIROCCO suite tool)
***** THIS PROJECT HAS MOVED TO https://gitlab.in2p3.fr/sirocco/sdap/sdap-dev ***** ***** THIS PROJECT HAS MOVED TO https://gitlab.in2p3.fr/sirocco/sdap/sdap-dev ***** ***** THIS PROJECT HAS MOVED TO https://gitlab.in2p3.fr/sirocco/sdap/sdap-dev ***** Within the SIROCCO suite of numerical tools, the purpose of SDAP is to provide a flexible platform to carry out multivariate assimilation of geophysical data in a numerical model. The program is multi-grid (finite differences or finite... -
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eavref
A tool for low-power CMOS voltage reference designs
EAVREF is a computer-aided tool for robustly designing ultra-low-power CMOS voltage references. The tool is compatible with the powerful Ngspice simulator, enabling open-source microelectronics design flow with SkyWater 130nm Technology. -
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CAMPARI
Software for molecular simulations and trajectory analysis
We are proud to introduce version 5 of CAMPARI. We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model. CAMPARI is a joint package for performing and... -
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CPAT
RNA coding potential assessment tool
Using RNA-seq, tens of thousands of novel transcripts and isoforms have been identified (Djebali, et al Nature, 2012 , Carbili et al, Gene & Development, 2011) The discovery of these hidden transcriptome rejuvenate the need of distinguishing coding and noncoding RNA. However, Most previous coding potential prediction methods heavily rely on alignment, either pairwise alignment to search for protein evidence or multiple alignments to calculate phylogenetic conservation score (such as CPC ,...
