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This project aims to be a easy-to-use toolkit of algorithms and utilities for semantic data mining. So far all algorithms are implemented as web services and we provide widgets for their use in the Orange4WS data mining platform.
PyBact is an open source software written in Python for Bacterial Identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test.
A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.
Simple python code that produces color-coded quality plots based on fastq format read quality scores. Scores are averaged over binned read tile coordinates. Useful for spotting spatial quality patterns.
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This is a c-library that provides tools for advanced
analysis of electrophysiological data. It features
denoising, unsupervised classification, time-frequency
analysis, phase-space analysis, neural networks, time-warping and
more.
A plug-in for Abaqus FEA with empiric data for many types of materials (linear, nonlinear, ortotropic). A simple GUI for creating properties for common materials and sections for bulk and shells.
CalPyLab is an open source data acquisition and (light) analysis software suite for scientific laboratories. The goal of this project is to provide a lightweight replacement for lab-view, to provide a quick and easy way to connect to your equipment.
Flow Investigation using N-Dimensions (FIND) is a program designed for analysis and visualization of Flow Cytometry data. FIND focuses specifically on automated population discovery (clustering) methods. The project targets both users and developers.
This is a set of scripts that helps with processing of NMR pH titration data. These scripts allow for fitting (using R) and plotting of data of multiple residues. The program needs to be made more user friendly.
PySpline is a graphical, cross-platform program for processing X-ray absorption spectroscopy (XAS) and Extended X-ray absorption fine structure (EXAFS) data. It allows processing parameters to be adjusted and observe the effect on R-space data.
Create Wincc Flexible alarms from Data Blocks of Simatic Manager
This is an application for creating alarms and PLC tags for Wincc Flexible (Siemens HMI Software) from one or several Data Blocks (DB) of the Simatic Manager. The application creates two files that can be imported in Wincc Flexible.
Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
ftc is a python script for content-based file type classification based on an file extension and magic number database, and several computational intelligence algorithms.
Echoproc is a piece of scientific analysis software used to extract physical ice sheet characteristics from radio echograms from experiments like the Center for the Remote sensing of ice sheets (https://www.cresis.ku.edu/)
Liegkat-Archiv delivers ALK converters for spatial data formats (EDBS, BGRUND, SQD, DFK, HK) and coordinate systems used in German cadastral agencies before ALKIS into KML and JML. It delivers Python packages and XSL files.
General purpose discrete event simulation (DES) framework for the Python programming language. Khronos gathers ideas from other simulation software and tries to provide a simple and poweful toolset for simulation of discrete systems.
QuickFlash is a C++-based analysis library for data files generated by the Flash hydrodynamics code. It provides high-performance access to large datasets in low memory situations and other restrictive environments.
Gaphor is a UML modeling environment written in Python. Gaphor is small and very extensible.
The repository is located at http://github.com/gaphor/gaphor.
QDeblend3D is a dedicated software tool for the deblending of QSO and host galaxy emission in 3D datacubes obtained with optical IFU spectrographs. The GUI allows to control the process and to visualize the results with an integrated cube viewer.