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A three-step approach towards experimental brain-computer-interfaces, based on the OCZ nia device for EEG-data acquisition and artificial neural networks for signal-interpretation.
CoCOOT is an extended collaboration system of COOT(Crystallographic Object Oriendted Toolit). It operates an add-on of original Coot. It enables to collaboration through internet.
Todays digital nomads own tons of multimedia data. And they own a set of very different devices to record, store and access that data. INTERMEDIA is a European project that aims at user-centric multi media access.
Our goal is to develop a full working solver for ATA (with 1 clock) in Python, with MTL to ATA support. The decidability for the emptiness problem was proposed by Lasota and Walukiewicz. The MTL to ATA was proposed by Ouaknine and Worrell.
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Python program for fitting rate constants to primarily kinetic data as 1st or 2nd order kinetics or autocatalysis. It also allows specific noise cancelling, data smoothing by fourrier transform, box averaging and flowing mean. For Python 2.6 or earlier.
BASILISK is a probabilistic model of the conformational space of amino acid side chains in proteins. Unlike rotamer libraries, BASILISK models the chi angles in continuous space, including the influence of the protein's backbone.
The C Protein Folding Library is a minimalistic, high-performance modular library of C functions and data structures for computing folding simulations of proteins on a wide variety of computer hardware.
Create geographics maps from data in table format. Serve map creation requests using a XML-RPC server. - Requires: mapnik, swftools, MySQL server and MySQLdb python module.
BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale.
RADAR stands for Rapid Automatic Detection and Alignment of Repeats in protein sequences. RADAR identifies gapped approximate repeats and complex repeat architectures involving many different types of repeats.
Radar has moved to github (https://github.com/AndreasHeger/radar)
ConDEnSE (Confidential Data Enabled Statistical Exploration) will be a web-based environment for statistical analysis of confidential data from various database sources, based on Plone and R, and using the Jackknife method of confidentiality protection.
AudioSavant is a music visualization software that is aimed to allow students to get a better understanding of music. It is based in the OLPC's TamTam application, with a set of modifications from the information visualization world.
MATmute is a MATLAB code mutation system targeted at developers of scientific software. The package includes a mutator, a MATLAB function to call the mutator and run the mutants, and some examples to demonstrate how to use the system.
The scikits.timeseries python module provides classes and functions for manipulating, reporting, and plotting time series of various frequencies. The focus is on convenient data access while leveraging the existing functionality in numpy.
Use of USB to Serial and USB to Parallel BUS CONVERTERS available from ElectronicBRICKS at http://electronicbricks.blogspot.com/search/label/usb-Brick.
Everyday Software for the Researcher of Restricted Means: This project is intended to offer scientists and students with small budgets advanced versions of aqua-built desktop-editing, graphics and statistical applications for MacOSX.
Tandem mass spectral peptide identification and validation software, similar to X!Tandem, OMSSA, MyriMatch. Suitable for single hosts through large clusters. Written in Python for simplicity, with performance-critical sections in C++.