Search Results for "epidemiology"
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Showing 13 open source projects for "epidemiology"
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Covidex
Ultra fast and accurate subtyping tool of viral genomes.
Viral subtypes or clades represent clusters among isolates from the global population of a defined species. Subtypification is relevant for studies on virus epidemiology, evolution and pathogenesis. In this sense, Covidex was developed as an open source alignment-free machine learning subtyping tool. It is a shiny app that allows fast and accurate classification of viral genomes in pre-defined clusters. If more than 1000 sequences are loaded the tool will run in multithread mode. Capable... -
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episerve
R-based server for infectious disease epidemiology
episerve is an R package providing functionalities for handling, visualizing and analyzing epidemics data through a R interface. -
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hackout2
Hackout 2: G.R.I.N.D.E.R.
Hackout 2: GRINDER is a hackathon that will focus on the development of Graphical Resources for Infectious Disease Epidemiology in R. It will take place in London, UK, on 10-13 February 2015. It is a follow-up event to Hackout, which took place in January 2013 in the MRC Centre for Outbreak Analysis and Modelling, Imperial College London, UK. -
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TextHunter
User friendly toolkit to extract structured data from free text.
TextHunter is being developed to support researchers who need to extract information from large volumes of free text. For example, in epidemiology, clinical researchers often need to review large numbers of electronic medical records to identify variables that describe the patient (symptomatology, medication status etc). This often a tedious process, increasing the difficulty and cost of research. To address this, TextHunter provides two key tools: - An efficient annotation interface... -
Red Hat Enterprise Linux on Microsoft AzureRed Hat Enterprise Linux (RHEL) on Microsoft Azure provides a secure, reliable, and flexible foundation for your cloud infrastructure. Red Hat Enterprise Linux on Microsoft Azure is ideal for enterprises seeking to enhance their cloud environment with seamless integration, consistent performance, and comprehensive support.
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LOE Software
Software for The LOE Serious Game
... (Laboratorium Of Epidemiology) est l'objet d'un projet de recherche et d'un projet d'enseignement. C'est un jeu de simulation qui n'est pas limité à un seul écran d'ordintaur puisque les étudiants interagissent avec des personnages non seulement au travers d’une plateforme Web, mais parfois «physiquement» avec leur téléphone portable et par e-mail. -
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The Matlab files described here refers the simulation described in the paper : “Rule-Based Model of Chronic Disease Epidemiology: Elderly Depression as an Illustration”, under submission in Plos One. Installation and user guide including example is inserted in the global .zip file (Appendix 5.pdf)
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STI analysis and forecasting
Analysis of drug resistance and epidemiology of STI (STD) in Russia
The STIanafor is a tool for spatio-temporal data vizualization, analysis and forecast of incidence of sexually-transmitted diseases and drug resistance of pathogens in the Russian Federation. Currently supports gonorrhoea (N. gonorrhoeae) and syphilis (T. pallidum). A set of real data for testing is provided. -
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Data curation tool to maintain variables for the National Survey of Health and Development managed by the Lifelong Health and Ageing Unit of the Medical Research Council.
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The NetEpi project is developing open-source, network-enabled tools for epidemiology and public health practice.
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Secure remote access solution to your private network, in the cloud or on-prem.OpenVPN is here to bring simple, flexible, and cost-effective secure remote access to companies of all sizes, regardless of where their resources are located.
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Software implementing various forms of the Reed-Frost model for epidemiology simulation purposes. This project includes deterministic and stochastic implementations, as well as, extensions to Reed-Frost.
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EpiForms is a PHP/MySQL web-based application which provides data management and reporting tools, for epidemiology purpose especially .
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GenEpiO
The Genomic Epidemiology Ontology covers food-borne disease terms
Here we introduce a Genomic Epidemiology Ontology (GenEpiO) that covers vocabulary necessary to identify, document and research food-borne pathogens and associated outbreaks. We envision various subdomains including genomic laboratory testing, specimen and isolate metadata, and epidemiological case investigations. The project files are currently hosted at https://github.com/GenEpiO/genepio/ . Here we provide the genepio-consortium@lists.sourceforge.net listserve. Terms for these subdomains...
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