Search Results for "can=" - Page 15
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Showing 512 open source projects for "can="
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convert2orcazmatrix
Python script that converts regular zmatrix to orca-zmatrix format.
Since I use GUI tools which only save the molecules to regular zmatrix format. I created a script that would convert the regular format to the special orca format. It is written in python and can be used like this. usage: convert2orcazmatrix.py [-h] -i INPUTFILE [-o OUTPUTFILE] -
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SunlightLB is an open-source 3d lattice Boltzmann code which can be used to solve a variety of hydrodynamics problems, including passive scalar transport problems.
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The PyCogent project is moving to GitHub. When completed, you will find us at http://github.com/pycogent/pycogent/. You can find the PyCogent website at http://www.pycogent.org.
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Laboratory notebook using version control system and independent date-time stamping (as notarization), in order to ensure record accountability, auditing, and conforming to US FDA 21 CFR 21's rule on electronic records. Please kindly rate this application or drop me an email at [ mauriceling AT acm DOT org ] so that I can hear from you. Otherwise, I have no idea who the users are. Please kindly help.
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GUANO
GUANO - Graphical User interface for performing ANalysis Of variance
...Features: - Capable of high order factorial designs (> 2 factors) - Within and mixed analyses of variance provide corrections for violations of sphericity (Huynh-Feldt, Greenhouse-Geisser, Box) - A variety of data transformations can be applied (log10, reciprocal, arcsine, square-root, and Windsor) - Generalized eta-squared measures of effect size - Post-hoc power analysis (should match G*Power) - Outputs include tables of estimated marginal means - Up to 4-way interaction plots with errorbars (png, svg) - Confidence intervals account for within-subject variability (where applicable; Loftus and Masson, 1994) - Non-proprietary HTML output files - Non-proprietary codebase Gotchas: - Assumes balanced designs -
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Gnuplot2TightPDF
Python script that produces a tight pdf from gnuplot with psfrag text.
...This script (gpt2pdf) makes it possible to generate pdf figures with 2D LaTeX maths on top of it by including psfrag replacements directly as comments in the gnuplot file. The resulting pdf file doesn't contain any extra white-spaces around it and as such can be comfortably included in any (pdf)LaTeX file. Requires: Python 2.4 - 2.7, LaTeX and the system commands ps2epsi and epstopdf which comes in with any ghostscript installation. Dr. Shibaji Banerjee Department of Physics St. Xavier's College, Kolkata Included: Main file: gpt2pdf.py demo file: demo.plt demo file; K.plt and K.txt Usage: gpt2pdf demo gpt2pdf K The script is written in pure python. ... -
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Plotmeister is a data exploration tool. It parses your ASCII data and generates a simple (text-based) table format. You can modify this table and eventually create nice looking figures.
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caseGen
... [BATCH], [ANALYZE] and [OPTIMIZE] cases in OpenFOAM and others
'caseGen' allows you to simplify your numerical simulation problem! Actual its not fairly tested so please contact me if you see any refinements or found bugs. -
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CoNIFER
Homepage for CoNIFER (Copy Number Inference From Exome Reads)
CoNIFER uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes. -
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Arachne
Exploration of a Hierarchical+Functional Approach To Data Organization
This is dedicated to development of a small class for organizing data in both a traditional parent<->child hierarchy and by the functions used to generate child data nodes from parent data. The core of the project is in the class definitions contained within arachne.py, a demonstration of how this method of arranging data can be used to solve a relatively interesting problem may be found in test.py -
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minder
Monitoring your infrastructure for free.
...We help you to answer: 1) What is the performance of my resources? 2) What equipment and resources do we have already? 3) What do we need to upgrade or repair? 4) What can we consolidate to reduce complexity or reduce energy use? 5) What resources would be better reused somewhere else? Status: PreAlpha, so any help shall be welcome. Made for LINUX. GNU General Public License version 3.0 (GPLv3) -
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Standalone application that uses the clipboard to insert a tag in any document and/or in a log file. Tags contain context information (e.g., date, author) + text note, picture or webcam shot. Tags can contain variables generated by user and/or external programs.
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Function Calculator
Calculate some BASIC mathematical function
Calculate some BASIC mathematical function You can browse the source at: https://github.com/TheNiceGuy/FunctionCalculator -
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Mathemapy
A Python calculator program
Mathemapy is a feature-rich calculator made in Python. It can do multiple types of division, solve equations, expand equations and more. -
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GemSIM is a software package for generating realistic simulated next-generation sequencing reads with quality score values. Both Illumina and Roche/454 reads (single or paired end) can be simulated using appropriate empirical error models.
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...The graphical interface (QT4) includes plotting (matplotlib), instrument configuration/monitoring and a program step creator. The communication with the hardware is independent of the GUI and any number of devices can be selected. To modify the code for any other task only the hardware interface needs to be redefined.
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OPyCua
OPC UA communication stack written in python
The goal of this project is to implement an OPC UA communication stack using the python programming language. Currently we are working on a series of articles, describing how we can use python to implement the communication stack. Some code snippets have already been written! -
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QUASR
Cross-platform NGS processing and analysis pipeline in Python
...Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is written in Python3. 7.X is my rewrite in Java, but is still work in progress. Both are written to be as lightweight as possible so they can run with minimal memory-requirements on a desktop or laptop as well as on a compute cluster. If you have any problems with QUASR, please do contact me at the email address provided in the README. -
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HMMLab
A Hidden Markov Model editor with support to HTK
HMMLab is a Hidden Markov Model editor oriented on HMMs for speach recognition. It can create, edit, train and visualize HMMs. HMMLab supports loading/saving HMMs from/to HTK files. -
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The QIIME project has moved to GitHub. You can now find us at http://github.com/qiime/. As always, you can find the QIIME website at http://www.qiime.org.
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Application for geocaching or waymarking that allows you to import GPX or LOC files for editing. You can print out cheat sheets to take on the trail, export to KML or HTML, and send the data to your handheld GPS unit.
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Lightning Planning Framework for ROS
ROS package implementing the Lightning Framework using OMPL
...Please see the paper below for more details: A Robot Path Planning Framework that Learns from Experience Dmitry Berenson, Pieter Abbeel, and Ken Goldberg IEEE International Conference on Robotics and Automation (ICRA), May, 2012. This package uses OMPL planners (http://ompl.kavrakilab.org/) to implement each component in lightning and can be called the same way as any other OMPL planner. The code was developed at UC Berkeley by Cameron Lee and Dmitry Berenson under the supervision of Prof. Pieter Abbeel and Prof. Ken Goldberg. Please see the Wiki for instructions on how to install and use lightning: https://sourceforge.net/p/lightningros/wiki/Home/ -
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Atlas2Cloud
Atlas2 Genome Analysis Pipeline on Amazon Web Services
...It is PRIMARILY meant to be used through Amazon Web Services (AWS) management console by looking for the public Atlas2-Cloud machine image. Alternatively, the code can also be used for running the pipeline from your computer. By installing this software on your computer you will be setting up your computer to act as the head node which would then run the pipeline from your computer. -
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Injection Wizard is an application for injecting traffic into WEP protected Wi-Fi networks, like aireplay-ng, but it's much more easy to use and it can work with worse conditions.
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QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.
