Showing 2231 open source projects for "project-open"

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  • 1

    miRPV

    miRPV: An automated pipeline for miRNA Prediction and Validation in si

    miRPV is an Automated tool that allows users to predict and validate microRNA from genome/gene sequence. System Requirement CPU: AMD64 (64bit) Memory: 2Gb RAM Storage: 5Gb Ubuntu 18.04
    Downloads: 0 This Week
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  • 2
    temp manager
    remove the temporary files using Temp manager, and automate the operation (remove the files every 5 seconds). Built with python. Interface : Tkinter.
    Downloads: 0 This Week
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  • 3
    CEA Simplified

    CEA Simplified

    tkinter wrapper for NASA CEA focused in rocket chemistry explanations

    CEA Simplified is a GUI for a released version of NASA's CEA program from the 1970s. It is similar to the rocketCEA library for python or the ProPEP GUIs in that it attempts to provide an updated tool for using the same underlying software, but it is more focused on being beginner friendly.
    Downloads: 7 This Week
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  • 4
    SciDAVis is a user-friendly data analysis and visualization program primarily aimed at high-quality plotting of scientific data. It strives to combine an intuitive, easy-to-use graphical user interface with powerful features such as Python scriptability.
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    Downloads: 1,515 This Week
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  • 5
    SBW (Systems Biology Workbench)

    SBW (Systems Biology Workbench)

    Framework for Systems Biology

    The Systems Biology Workbench(SBW) is a framework for application intercommunications. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32. It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as...
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    Downloads: 19 This Week
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  • 6
    Pysces

    Pysces

    PySCeS is the Python Simulator of Cellular Systems

    PySCeS is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis.
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    Downloads: 0 This Week
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  • 7
    Truss-101

    Truss-101

    A desktop application written in Python to solve 2D truss structures.

    A desktop application to solve statically determinate and indeterminate 2D truss structures using Matrix Displacement Method (aka Finite Element Method).
    Downloads: 9 This Week
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  • 8
    XISMuS

    XISMuS

    X-Ray Imaging Software for Multiple Samples

    ...IMPORTANT FIXES in respect to base v2.0.0 version: v.2.5.0 introduces the Differential Attenuation and Cube Viewer utilities, and migrates user database to *.json files v2.4.3 fixes a with K element in the fit-approx method v2.4.3 fixes and issue where saving plots with fit-approx or a auto-wizard could freeze the software v2.4.2 introduces Image Viewer to Mosaic v2.4.1 fixes an issue in merging H5 or EDF datasets with Mosaic Full changelog at https://linssab.github.io/history X-Ray Fluorescence Imaging Software for Multiple Samples is an open source software to manipulate and study macro-X-Ray Fluorescence (MA-XRF) datasets. XISMuS also works as a sample management tool, where you can easily change between datasets (samples) and compare, cross-interact and normalize them.
    Downloads: 3 This Week
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  • 9
    MiModD

    MiModD

    Mutation Identification in Model Organism Genomes using Desktop PCs

    MiModD is a software package for genomic variant identification from next-generation sequencing (NGS) data with optimized usage of system resources and a user-friendly interface. For most model organism genomes it lets the user carry out a complete analysis from unaligned genomic NGS read data to an annotated list of variants on a regular Desktop PC within a few hours. Its user-interface is beginner-friendly and designed to encourage geneticists to analyze NGS data themselves without the...
    Downloads: 0 This Week
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  • 10
    GDAL wheels for linux

    GDAL wheels for linux

    GDAL wheels for python and C/C++ projects (Linux only)

    To use precompiled wheels: 1) go to releases (Files) and download tarball needed; 2) install it with command: python3 -m pip install /path/to/wheel.whl Or simply use URL in pip: python3 -m pip install https://sourceforge.net/projects/gdal-wheels-for-linux/files/GDAL-3.1.4-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl/download URL may be found under "View details" button (i) To use GDAL in C/C++ project you need to link gdal lib AND all libs located at dir GDAL.libs (usually this folder resides inside python site-packages) To compile your own wheels see information given at forefather project: https://github.com/youngpm/gdalmanylinux Usually this is done via command `make wheels` GDAL wheels for Windows are provided by Christoph Gohlke at https://www.lfd.uci.edu/~gohlke/pythonlibs/#gdal Built with PROJ (proj.db is included), GEOS, EXPAT. ...
    Downloads: 14 This Week
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  • 11
    MuJoCo-py

    MuJoCo-py

    mujoco-py allows using MuJoCo from Python 3

    ...It provides utilities for loading models, running simulations, and accessing simulation states in real time, along with visualization tools for rendering environments. The project also includes interactive examples showcasing collision handling, texture randomization, state resetting, and robot control. By bridging MuJoCo with Python, mujoco-py enables rapid prototyping, training, and evaluation of AI agents in physics-rich environments.
    Downloads: 2 This Week
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  • 12
    Gambit
    A library of tools for doing computation in game theory.
    Downloads: 20 This Week
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  • 13

    pyModSlave

    Modbus TCP/RTU Slave Software.

    ...You can install the python module or use the precompiled (for Windows only) stand alone GUI (Qt based) utility (unzip and run). pyModSlave also includes a bus monitor for examining all traffic on the bus. You can also download it from pypi <https://pypi.org/project/pyModSlave/>. pyModSlave is based on modbus-tk <http://code.google.com/p/modbus-tk/>, pySerial <https://github.com/pyserial/pyserial> and pyQt5 <http://www.riverbankcomputing.co.uk>. Check out my modbus master project <http://sourceforge.net/projects/qmodmaster/>. Checkout the following youtube videos : Modbus RTU <https://youtu.be/1get1ELKz_A> Modbus TCP <https://youtu.be/nX_kTQwK2f4> Session <https://youtu.be/y_9Di7E3y8w> Log <https://youtu.be/Xcb6sj1uzyY>
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    Downloads: 50 This Week
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  • 14
    StreamAlert

    StreamAlert

    StreamAlert is a serverless, realtime data analysis framework

    StreamAlert is a serverless, real-time data analysis framework that empowers you to ingest, analyze, and alert on data from any environment, using data sources and alerting logic you define. Computer security teams use StreamAlert to scan terabytes of log data every day for incident detection and response. Incoming log data will be classified and processed by the rules engine. Alerts are then sent to one or more outputs. Rules are written in Python; they can utilize any Python libraries or...
    Downloads: 0 This Week
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  • 15
    FreeCAD-PCB

    FreeCAD-PCB

    Import your PCB boards to FreeCAD

    .... ***** Supported software: - Eagle (*.brd) - Razen (*.rzp) - FreePCB (*.fpc) - gEDA (*.pcb) - FidoCadJ (*.fcd) - KiCad (*.kicad_pcb) - IDF v2/v3 Requirements: FreeCAD >= 0.14 Project forum: https://sourceforge.net/p/eaglepcb2freecad/forum/
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    Downloads: 3 This Week
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  • 16

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    MAGeCK2 is here: https://github.com/davidliwei/mageck2 Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at...
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    Downloads: 151 This Week
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  • 17

    MITRE Annotation Toolkit

    A toolkit for managing and manipulating text annotations

    The MITRE Annotation Toolkit (MAT) is a suite of tools which can be used for automated and human tagging of annotations. Annotation is a process, used mostly by researchers in natural language processing, of enhancing documents with information about the various phrase types the documents contain. MAT supports both UI interaction and command-line interaction, and provides various levels of control over the overall annotation process. It can be customized for specific tasks (e.g.,...
    Downloads: 1 This Week
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  • 18
    ECOLOG

    ECOLOG

    A database management system for ecological field surveys

    ECOLOG is a specimen-based, cross-platform relational database management system, aimed at the storage, retrieval and preliminary analysis of data on sites, species, and specimens gathered in ecological field surveys and biodiversity inventories. The main goal of ECOLOG is to make the data gathered in ecological field surveys readily accessible, providing lists of species collected in the study area and informations on habitat preferences, abundance or rarity of a given species, biometrics,...
    Downloads: 0 This Week
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  • 19

    FilmQADog

    Program for analysis of radiochromic films

    This is Python based program for analysis of radiochromic films. Similar to filmQAPro, but free. It can be used to study Gafchromic EBTX films.
    Downloads: 3 This Week
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  • 20
    Argos Translate

    Argos Translate

    Open-source offline translation library written in Python

    Argos Translate uses OpenNMT for translations and can be used as either a Python library, command-line, or GUI application. Argos Translate supports installing language model packages which are zip archives with a ".argosmodel" extension containing the data needed for translation. LibreTranslate is an API and web-app built on top of Argos Translate. Argos Translate also manages automatically pivoting through intermediate languages to translate between languages that don't have a direct...
    Downloads: 122 This Week
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  • 21
    HistogramsApp

    HistogramsApp

    Application that generates KDE-PDP plots from geochronological data

    HistogramsApp is a Python 3.6 application that generates (KDE and PDP) from geochronological data .HistogramsApp allows to interactively setup plot parameters such as the bandwidth and the peak detection sensibility. To cite the application please refer to: 1) https://www.tandfonline.com/doi/abs/10.1080/00206814.2021.1954556?journalCode=tigr20 Rodriguez-Corcho, A. F., Rojas-Agramonte, Y., Barrera-Gonzalez, J. A., Marroquin-Gomez, M. P., Bonilla-Correa, S., Izquierdo-Camacho, D.,...
    Downloads: 1 This Week
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  • 22
    Pyslvs

    Pyslvs

    Open Source Planar Linkage Mechanism Simulation and Synthesis Software

    Downloads: 5 This Week
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  • 23
    Celestial Precomputation

    Celestial Precomputation

    Sight Reduction for Air Navigation with Python

    Warning: I found an error if the DR position is on the southern hemisphere. The PUB249 pdf files did not show this error and are correct (as far as I checked). All Revisions 8+ and the Windows release have been fixed. This Python TK application calculates a good set of stars for a 3 star fix, makes all calculations similar to the FAAs Celestial Computation Sheet (see FAA doc FAA-H-8083-18). Also, you can create a PDF file that generates Pub 249 Vol 1 for any epoch you specify. The...
    Downloads: 1 This Week
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  • 24
    Xmaldi

    Xmaldi

    Viewing collections of MALDI spectra and perform PCA and DFA analyses

    Xmaldi is an application for viewing collections of MALDI spectra and perform PCA and DFA analyses on them (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/xmaldi3/code/ci/default/tree/README.md
    Downloads: 0 This Week
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  • 25
    JSONVisor

    JSONVisor

    Visor for mass spectrometry JSON files generated by Integrator

    ...For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/jsonvisor3/code/ci/default/tree/README.md - Gallardo, Ó., Ovelleiro, D., Gay, M., Carrascal, M., & Abian, J. (2014). A collection of open source applications for mass spectrometry data mining. PROTEOMICS, 14(20), 2275–2279. https://doi.org/10.1002/pmic.201400124
    Downloads: 0 This Week
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