Showing 15 open source projects for "tiny core linux"

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  • 1
    MMAP

    MMAP

    Multi-core Method for Analysis Pipelines

    For more information, please see home page.
    Downloads: 4 This Week
    Last Update:
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  • 2
    Meraculous-2D

    Meraculous-2D

    Eukaryotic Genome Assembler

    ... allelic variation - Improved scaffolding that produces more complete assemblies without compromising scaffolding accuracy. The assembly is driven by a perl pipeline which performs data fragmentation and load balancing, as well as submission and monitoring of multiple task arrays on a GE/SLURM-type cluster or a standalone multi-core server. Manuscripts in submission: https://arxiv.org/abs/1703.09852 https://arxiv.org/abs/1608
    Downloads: 1 This Week
    Last Update:
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  • 3

    Panacea

    PAN And Core-gEnome Analysis

    A tool to calculate the Pan-Genome of a set of annotated genomes
    Downloads: 0 This Week
    Last Update:
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  • 4
    RUbioSeq
    ... these common tasks. RUbioSeq+ is free and includes all the core functionalities implemented in the original release of RUbioSeq (v3.2.1) but, also, outperforms and expands RUbioSeq capabilities supporting the parallelized analysis of full genomes in computing farms. RUbioSeq+ also incorporates a new GUI designed for interdisciplinary research groups where bioinformaticians and biomedical researchers work together.
    Downloads: 0 This Week
    Last Update:
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  • 5

    Hamstr

    A tool for directed ortholog search in ESTs and proteins

    HaMStR has moved to https://github.com/bionf/hamstr where it is now part of the HaMStR-OneSeq package. HaMStR is a profile hidden Markov model based tool for a directed ortholog search in EST or protein sequence data. The program takes a pre-defined core group of orthologous sequences (core orthologs) and a set of sequences from a search taxon as input. HaMStR then combines in a two-step strategy a pHMM based search and a reverse search via BLAST to extend the core ortholog group with novel...
    Downloads: 0 This Week
    Last Update:
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  • 6
    ElixirFM

    ElixirFM

    Functional Arabic Morphology

    ElixirFM is a high-level implementation of Functional Arabic Morphology. The core of ElixirFM is written in Haskell, while interfaces in Python and Perl support lexicon editing and other interactions. http://github.com/otakar-smrz/elixir-fm
    Downloads: 0 This Week
    Last Update:
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  • 7

    Corbata

    CORe microBiome Analysis Tools

    Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.
    Downloads: 0 This Week
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  • 8

    Automalator

    State Dependency deconstructor and mapper for C source code.

    Flowcharts not telling you what you want to know about some C source code? Try a State Dependency map! Every C source file is an implemention of a state machine. Implicit in the definition of a state machine is a network of dependencies between the states. The Automalator * deconstructs the C code into the core state machine * collates the transactions into the dependency net * generates a diagram-format file with the states and dependencies as the nodes and edges. Pre...
    Downloads: 0 This Week
    Last Update:
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  • 9
    Bacterial Makeup Explorer

    Bacterial Makeup Explorer

    Bacterial Make eXplorer analyses bacterial genome ortholog maps

    BMX (Bacterial Makeup eXplorer) computes the core genome size and composition from orthologous maps.
    Downloads: 0 This Week
    Last Update:
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  • 10

    GenOO-HTS

    A Modern Perl Framework for High Throughput Sequencing analysis

    GenOO-HTS [jee-noo] is an open-source; object-oriented Perl framework specifically developed for the design of High Throughput Sequencing (HTS) analysis tools. The primary aim of GenOO-HTS is to make simple HTS analyses easy and complicated analyses possible. GenOO-HTS models biological entities into Perl objects and provides relevant attributes and methods that allow for the manipulation of high throughput sequencing data. Using GenOO-HTS as a core development module reduces the overhead...
    Downloads: 0 This Week
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  • 11
    Opensource Home Automation software suite. Includes multiple xPL applications, a core controller and UI
    Downloads: 0 This Week
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  • 12
    CDNsim is a GNU/LINUX simulation tool for CDNs, written in C++ (core) and python (GUI wizard). It models: redirection policies, cache policies, TCP/IP, batch simulations, statistics extraction and more. CDNsim is uses the OMNet++ library
    Downloads: 0 This Week
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  • 13
    GTdb - Modular genotype database for all markers. The database has core which captures information common to different variation measurements and extensions to method and instrument specific data.
    Downloads: 0 This Week
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  • 14
    Maiden-core is a Linux kernel robotics API module, extensible in Erc. The Maiden Project also documents and develops the Maiden architecture for mobile robots, a set of (optional) designs and standards for robots using the Maiden-core API.
    Downloads: 0 This Week
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  • 15
    aIRCraft is a Small and Fast pluggable perl-irc-robot designed to provide both certain services like Weather forecast, definition databases and a stable botnet core. Since it is highly pluggable modules can be written very easily.
    Downloads: 0 This Week
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