Search Results for "run time java"

The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

The only open source counter to count any items the simplest and easiest way with the keyboard, or the mouse specifically on images. After associating a key to each item, or a predefined graphical symbol for images, pressing the key or clicking on the image increments its associated counter, and displays (for the images) the symbol at the mouse's pointer location. Such a project is so simple a child could use it!

*** Bridge Designer has been replaced with the web app ASCE Bridge Designer, Cloud Edition (Google this term to find the app)! Binaries posted here will go away on 1 July 2026. The source repo will remain. The contest is no longer active. *** A national virtual bridge engineering contest with prizes for middle and high school kids, grades 6 to 12, but anyone can enter for fun. Based on the award-wining Bridge Designer client software, now open source through this project. Web site...

Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data....

RPi-Monitor is a monitoring tool which keep an eye on your computer and can give you the current status and the history of resources usages in a nice looking and interactive web interface. RPi-Monitor is design to be light and powerful and doesn't relies on other software to run. It has been deigned to run on embedded device and consume very few system resources.

TE-locate is a tool to locate all copies of sequences in a reference sequence using read-pairs. TE = Transposable Element Input is NGS-data. Please download all files first (including the demo data) and make your first run then.

The microRNA Temporal Analyzer (mirnaTA) is a bioinformatics tool which can be used to identify differentially expressed miRNAs in temporal studies. It is implemented in Perl and R package (>= 2.13.0) and can be run across multiple platforms such as Linux, Mac and Windows. The mirnaTA requires that users provide data from a minimum of two time points and analyze up to 20 time points. To normalize data and remove technical variability, Normal Quantile Transformation (NQT) was used, and the normalized data is analyzed using linear regression model to locate any miRNAs which are differentially expressed in a linear manner. ...

The project is aiming to do two things: track the total transit time it takes a news story to travel from site A to site Z across the net and we'll be indexing the content of the article at each hop and tracking the morphing of the content as it goes

FreeNorm is a cross-tabulation web application adapted from SurveyComplete's real-time reporting system. Currently it can run tabs on extremely large datasets, export to Excel, read ASCII data, and understand table definitions in the UNCLE tab language.