Showing 75 open source projects for "gtd-free"

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  • 1
    Free DELTA

    Free DELTA

    Software tools for processing taxonomic descriptions in DELTA format

    The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format.
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    Downloads: 28 This Week
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  • 2
    Source code from the Research Institute for Signals, Systems and Computational Intelligence http://fich.unl.edu.ar/sinc
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    Downloads: 13 This Week
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  • 3

    EvidentialGene

    Evidence Directed Gene Construction for Eukaryotes

    ... and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification. All software developed for EvidentialGene is publicly available. See project wiki/blog for notes.
    Downloads: 6 This Week
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  • 4
    CSI-Math-Notation-PostfixInfix

    CSI-Math-Notation-PostfixInfix

    Perl Lib Math Notation

    * Introduction: - This Module is a Library based Perl code. - The library provide: - Convert INFIX expressions to POSTFIX; - Convert POSTFIX expressions to INFIX and; - Perform POSTFIX context validations. - Context validation can be implemented in item selection routines or data context validation, when it is possible to identify data to be selected or ignored in some data analysis process. * Support: The Support Service is FREE. Do you need support? Open...
    Downloads: 0 This Week
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  • 5
    RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX documents, sort of a Reference Manager or BibTeX for markup languages. It is portable and known to run on Linux, Free/NetBSD, OSX, Solaris, and Windows/Cygwin.
    Downloads: 17 This Week
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  • 6
    LP CSIC/UAB Apps and Code

    LP CSIC/UAB Apps and Code

    Software and Code from Laboratori de Proteòmica CSIC/UAB

    Software, Code and Documents from Laboratori de Proteòmica CSIC/UAB ( LP-CSIC/UAB: http://proteomica.uab.cat )
    Downloads: 0 This Week
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  • 7

    Microarray assosiated motif analyzer

    Cis-element prediction tool from microarray data

    We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses. Simulation of gene expression was performed using a support vector machine and based on the presence of predicted motifs and motif pairs. The accuracy of simulated gene expression was used to evaluate the quality of prediction and to optimize the parameters used in this method...
    Downloads: 0 This Week
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  • 8
    MetaErg

    MetaErg

    Metagenome Annotation Pipeline

    MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full. If you are using this pipeline for your work, please cite: Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999 The instructions on configuring and running the MetaErg pipeline is available at GitHub...
    Downloads: 0 This Week
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  • 9
    MTKBabel is a Perl program to operate the i-Blue 747 GPS data logger. It should work also with other GPS devices based on the MediaTek MTK chipset. It is free software released under the GPL license.
    Downloads: 2 This Week
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  • 10
    The OpenGEREA is a open enrichment analysis framework for gene expression regulation data analysis.
    Downloads: 0 This Week
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  • 11
    OpenATPOL

    OpenATPOL

    A reference implementation of the Polish geobotanical grid

    This project is a reference, open source implementation of the coordinate conversion algorithms for the Polish geobotanical grid called ATPOL.
    Downloads: 0 This Week
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  • 12
    aioulinux

    aioulinux

    Linux for Arduino and Makers developers

    Hello, I'm the Aioulinux founder, eager to professionally revive the project. Since 2018, the demand for an IoT and Arduino-tailored environment has been evident. Seeking partners for a 2024 version targeting schools and IoT companies, aiming for a secure and comprehensive platform. If you share this vision and wish to collaborate, reach out. Let's revive Aioulinux stronger than ever! Now seeking partners: Live Distro Specialist: Expert in live distributions to ensure...
    Downloads: 0 This Week
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  • 13
    The Hspell Project

    The Hspell Project

    A free Hebrew spell-checker and morphological analyzer

    hspell - Hebrew spellchecker
    Downloads: 0 This Week
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  • 14
    Tools for FPGA development and IP cores. This project provides tools, cores and documentation to develope FPGA applications. The project focuses on VHDL.
    Downloads: 7 This Week
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  • 15
    RUbioSeq
    ... these common tasks. RUbioSeq+ is free and includes all the core functionalities implemented in the original release of RUbioSeq (v3.2.1) but, also, outperforms and expands RUbioSeq capabilities supporting the parallelized analysis of full genomes in computing farms. RUbioSeq+ also incorporates a new GUI designed for interdisciplinary research groups where bioinformaticians and biomedical researchers work together.
    Downloads: 0 This Week
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  • 16

    ISVASE

    identification of sequence variant associated with splicing event

    To generate correct mature mRNAs, the exons must be identified and joined together precisely and efficiently by RNA splicing mechanism. It is to be noted that about one third or a half of all disease-causing mutations effect RNA splicing. However, there is little bioinformatics tools to directly identify sequence variants associated with splicing events (SVASE) based on RNA-seq data. We developed ISVASE, a simple and convenient tool for identifying SVASE directly using RNA-seq data....
    Downloads: 0 This Week
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  • 17

    RGAAT

    Reference based genome assembly and annotation for new genome

    This program can assemble and/or annotate genome for new genome and known genome upgrade using sequence alignment file (SAM or BAM format), sequence variant file (VCF format or five coloum table (tab-delimited, including chromosome, position, id, reference allele and alternative allele)) or new genome sequence file (FASTA format) based on reference genome sequence file (FASTA format) and annotation file (TBL, GTF, GFF, GFF3 or BED format).
    Downloads: 0 This Week
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  • 18
    SNooPer
    A machine learning-based method for somatic variant identification from low-pass next-generation sequencing.
    Downloads: 1 This Week
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  • 19
    Krishnamurti's Book of Life D.Thoughts

    Krishnamurti's Book of Life D.Thoughts

    Jiddu Krishnamurti's Book of Life

    FREE distribution of the JAVA-XML multiplatform e-book about Jiddu Krishnamurti's Book of Life (a witty daily cookie-like reflection). Ahora, lea diariamente los pensamientos de Krishnamurti en castellano- Obtenga una agenda gratis.
    Downloads: 0 This Week
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  • 20
    The Protein Similarity Network

    The Protein Similarity Network

    Human protein similarity network used to predict drug safety.

    This is the protein similarity network - PSIN. Here, the nodes are human proteins and they are linked only if they share considerable sequence similarity. We found that this network is particularly useful to distinguish approved from problematic drug-targets. Here you also find the complete set of programs and datasets we used for this purpose. Free to help further test and develop this project. Your help and expertise are much appreciated ! If you have any questions, please do...
    Downloads: 0 This Week
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  • 21
    SimpleMap

    SimpleMap

    A tool to streamline high density genetic linkage group constrcution

    Downloads: 0 This Week
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  • 22
    Full featured free PACS based on dcm4chee and mysql, with remote web accession available for Linux in Debian packaging format for x86 32 and 64 bit processors. (KEYWORDS: PACS,DICOM,HL7,WORK LIST)
    Downloads: 2 This Week
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  • 23
    Open Nautical Charts
    Open Nautical Charts offers free seacharts for everybody. This charts are usable (offline) with several ship-plotters and Navigation-equipement on board. kap, Png, Jpr, png-cal, For user with Open CPN or SeaClear and other.
    Downloads: 71 This Week
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  • 24
    FOCIS

    FOCIS

    FOCIS finds features for functional follow-up

    FOCIS (Feature Overlapper for Chromosomal Interval Subsets) performs an interval-based screen of a database of genomic features – ChIP-seq peaks, motif matches, and others – for overlap enrichment at a specific subset of genomic regions relative to a dataset-matched background. It was recently used to discover a novel enhancer that mediates drug resistance in melanoma.
    Downloads: 0 This Week
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  • 25
    First automated tool for classification of transposable elements in eukaryotic organisms.
    Downloads: 0 This Week
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