Search Results for "db"

Eng-DB-2 is a light-weight engineering database. It allows to manage components/assemblies and their associated AVLs and technical documentation, assemble BOMs for finished goods and annotate these with quotations received from suppliers.

An innovative Open Source CEP (Complex Event Processing) engine. It implements the event stream processing as a library embeddable in C++ and Perl. You can think of the Complex Event Processing engine as an in-memory database driven by triggers, or a data-flow machine, or a spreadsheet on steroids (and without the GUI part).

A header file (cexcept.h) that provides Try/Throw/Catch macros similar to those available in C++ for error handling.

TaxOnTree is a phylogenetic program for associating Taxonomic information in a phylogenetic tree. The output is a NEX format tree file configured to be opened in FigTree, that users can promptly color by any taxa or by the ancestrality shared by sequences with query. Input can be a Fasta formatted file to be used in a BLAST search or a list of sequences represented by their identifiers (UniProtAC or NCBI gi), if a cluster is already available. Also, a newick file produced with user software...

The MAGE-TAB Utilities project provides a simple Perl SDK for parsing, manipulating, visualizing and exporting data in MAGE-TAB format. All file releases are now being made via CPAN.

TreeBASE is a database and web front end that stores phylogenetic trees and the data matrices used to generate them. The current iteration comprises a complete rewrite of the schema and web layer, and will include a web services layer.

A collection of software made by Milos Rancic.

Bioinformatic tools for analyzing an orfeome using translated ORFs and compares each ORF to the provided Orfeome/Proteome. Our script uses NCBI BLAST run locally and MySQL as the main engines in a new and interisting way. It is designed specifically for Poxvirus genomes, and provides the VACV-COP nomenclature and Cowpox Ortholog groups per each ORF. The BLAST stats are generated when compared to the Proteome you provide. It can be easily adapted for other genomes.

ClinStudyWeb is designed to provide a flexible infrastructure for managing patient and assay data from clinical studies. It uses a plugin system for study-specific web forms and arbitrarily complex test classifiers, and supports XML import/export.

This project aims the requirement of managed informations / documents in the treatment of patients, i.e. integrated care. The underlaying data model implements standards of electronic health recording, the project is based on a SQL db and Java EE framework. This is currently a student driven project for educational purposes.

The Generic Genetic Studies Database (GGSD) is a web-based, relational database driven data management software package for the management of large scale genetic studies.

PheMaDB is a web-based data management system to store and analyze OmniLog Phenotype Microarray data. The manuscript can be accessed here: http://www.biomedcentral.com/1471-2105/12/109. Chang WE et al. BMC Bioinformatics. 2011 Apr 20;12(1):109.

This is a project regarding parsing data from different(general) sources and representing it in form of graphs.

Neurospaces is a development center for tools in computational neuroscience. See http://www.neurospaces.org/

SURFnet IDS, a Distributed Intrusion Detection System (D-IDS). The goal is to provide an early warning system which lets system administrators correlate known and unknown exploits to attacks directed towards their networks.

PGM Server is a database abstraction layer and information exchange broker for the Pocket GPS Manager (PGM) project, with a service-oriented public interface using a classic CGI-based approach.

Modware is an easy to use Perl library for querying and modifying genomic data in a Chado database. It provides a powerful link between BioPerl and Chado. This Chado API provides an intutitive way to use Chado from Perl.

mySQL db app that stores chemical structures, calc. descriptors and property values. It has a descriptor calculator and a method that filters descriptors correlated with property values. Easy to plug-in your descriptor calc. Ideal for QSAR specialists!

Cis-Regulatory analysis modules. Includes frequenc/weight matrices scanning at genome level, annotation by using DB access to ensembl, genekeydb, etc. and visualization (through Bioperl or as custom UCSC tracks). May include gene set analysis in future.

Maiden-core is a Linux kernel robotics API module, extensible in Erc. The Maiden Project also documents and develops the Maiden architecture for mobile robots, a set of (optional) designs and standards for robots using the Maiden-core API.

PACLIMS (Phenotype Assay and Characterization Laboratory Information Management System) is a web-based, open source software system for tracking and data capture from high throughput mutational screens. Click on the Home Page Link above for test DB

wfb2sql is a Perl script that extracts information from the CIA World Factbook and creates SQL statements for IBM DB/2, PostgreSQL or MySQL. This data builds a perfect database for learning and teaching SQL.