Search Results for "basic"

WxTools (Weather Data Tool Suite) is a collection of software for collecting and displaying weather data from various weather stations. The software works with the Fine Offset WH290 and similar models (including clones such as the Pro-Signal PSG04173). It also works with the Oregon Scientific WMR180 weather station (and probably similar models such as the WMR88 and WMR100) as well as the older WMR928. Sample weather data is provided.

EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification. ...

COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through...

This project is a reference, open source implementation of the coordinate conversion algorithms for the Polish geobotanical grid called ATPOL.

The NGS TOOLBOX is a collection of simple open source Perl scripts that perform basic analyses and processing steps using next generation sequencing (NGS) datasets. Each tool is designed to ensure convenient and intuitive usage. Installation and usage does not require any bioinformatics skills. All scripts work out-of-the-box. Advanced users may use the command line based Perl scripts to build automated sequence analyses/processing pipelines.

OneLDAP is a limited LDAP server that is a proxy to other common protocols, such as POP3 and IMAP. It provides basic SEARCH and BIND functions for standard LDAP authentication. It is based on the shell backend function of OpenLDAP. Release files are available at the project website.

Ours organization website GCModeller.org is coming online soon! Shoal Shell is the sub project for the "genome-in-code"(http://code.google.com/p/genome-in-code/) virtual cell modelling project of the bacteria Xcc 8004. Shoal Shell aim at provide the modelling tool and the debugging tool for the GCModeller virtual cell modelling, And from the extendible library package, shoal shell can manage to accomplish the entire modelling job for any other bacteria species. Shoal Shell Project...

Average is a simple and fast command-line Perl utility for calculating basic statistics on a list of numbers (one number per line). It works as a traditional Unix filter and can be used as part of those greatly useful chains of piped commands. It calculates average (arithmetic mean), standard deviation, median, total sum, minimum and maximum values present, and shows the number of processed numbers.

A bioinformatics tool to PRe-process and show INformation of SEQuence data. The tool is written in Perl and can be helpful if you want to filter, reformat, or trim your sequence data. It also generates basic statistics for your sequences.

MFPaQ allows fast and user-friendly verification of Mascot result files, as well as data quantification from proteomics experiments. It supports several quantification approaches: isotopic labeling (SILAC, ICAT, ICPL, N14/N15...) and label-free.

G.R.E.A.T. - Google Earth Reporting Engine and Analysis Tool The Goal of this project is to create a basic IDS interface with Google Earth. Currently generates a KML file of traceroute/whois information suitable for use in Google Earth

...The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the modules. SVMlight, SIFT, Polyphen2, SNPs&GO and Mutation Assessor are the property of their respective authors and institutions and are not distributed in this package.

CPU Balance is a Perl script to balance the CPU usage among users. It will allocate CPU resource to each user equally only by the command renice, no matter how many processes/threads a user runs. ################ # Basic Renice Goal ################ 1. User-based balance: every user get the same cpu percentage if they ask for more; 2. all the jobs of one user has the same NI; 3. NI of all jobs tend to move as large as possible when balanced; 4. No sudden change on NI. max change of NI of a proc <= 2. Only 1 user will be changed in a renice cycle. ################ # Advanced Features ################ 1. gid/uid/cmd based renicable filter 2. gid/uid based weighted cpu division: priority & punished user support

STATPerl (Statistics with Perl) is a free Statistical Software based on Perl. Perl source codes for various statistical analysis are given with it. User can add new analysis and edit existing one. An inbuilt Perl IDE comes with it.

Middle level device drivers for the Ultraship U-2, a USB HID scale, no brand or company name available. Includes basic test scripts, drivers, example implementations and documentation. The output of this driver will insert it into applications.

A repository linking to eight Bioinformatics Resource Centers (BRCs) sponsored by the NIAID. The BRCs are providing web-based resources to scientific community conducting basic and applied research on organisms considered potential agents of bioterrorism

Basic implementation of K-nearest neighbour Algorithm and the application of KNN to classify protein sequences as transmembrane beta barrel or non-transmembrane beta barrel on the basis of whole sequence amino acid composition given as input.

Under development for Prof Stephen Hawking and people like him. With control of a single click only, the solution user should Type, Speak, and Command the computer. We want to expand beyond English and MS Windows to multiple languages, multiple platforms

blaSTOR is a Microsoft Access database used to BLAST, store and analyze multiple nucleotide and protein sequences. It has an easy-to-use graphical interface that allows users to perform BLAST operations and organize their data quickly and effectively.

Aquifer Analysis Tools

RandService is a Web Service which supplies pseudo- or true- random numbers through JAX-RPC API. Any random number generators can be used behind this Web Service.

An attempt at developing an Artificial Inteligence software, based on the notion that inteligence is a set of conditional choices (in programming terms, it means a whole lot of if statements).