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MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel.

TomoJ is an ImageJ plug-in for tomographic reconstruction. It was designed for electron tomography, however any acquisition with parallel beam should work. TomoJ proposes the preprocessing and the registration of tilt-series prior to 3D reconstructions (WBP, ART, SIRT, OS-SART, compressed sensing). TomoJ is written in Java, the computations are multithreaded and reconstruction can be performed on CPU or GPU (OpenCL). registration is described in: Journal of Structural Biology: X....

The Package is installable in GNU Octave and offers OpenCL support for parallelization of numerical computations. It is most effective for computations which are based on large vectors or n-dimensional arrays of numbers, and mostly (but not limited to) identical element-wise operations. The user can select which available OpenCL hardware and drivers are to be used. The Package offers new numeric data types with many built-in operations (e.g., overloaded operators). It is flexibly...