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  • 1
    CBIG

    CBIG

    Computational Brain Imaging Group tools

    CBIG is a comprehensive toolkit maintained by Thomas Yeo’s Computational Brain Imaging Group containing tools for processing and analyzing neuroimaging data—including fMRI preprocessing pipelines, brain parcellation algorithms, mental disorder subtyping models, fMRI dynamic models, registrations between brain spaces, and phenotypic prediction algorithms. After cloning/downloading this repository, please see README inside setup directory to see instructions on how to set up your local environment to be compatible with our repository. Brain parcellation tools (e.g., Yeo networks, Schaefer parcellations) for cortical mapping.
    Downloads: 0 This Week
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  • 2

    DDE-BIFTOOL

    Bifurcation analysis for delay-differential equations

    DDE-BIFTOOL is a set of routines for performing numerical bifurcation analysis of delay-differential equations, running in Matlab or Octave[2]. It was originally created by Koen Engelborghs at KU Leuven (Belgium). [1] Tutorial demo <http://ddebiftool.sourceforge.net/demos/neuron/html/demo1_simple.html> shows the output of an illustrative demo. <http://ddebiftool.sourceforge.net> links to documentation, a list of contributors and current maintainers.
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    Downloads: 11 This Week
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  • 3
    The Multivariate Regression Composer, a Matlab toolbox. It generates a regression model of the optimal structure. Uses the source data set, the initial models and the primitive functions.
    Downloads: 0 This Week
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  • 4
    FEATool Multiphysics - FEA & CFD Toolbox

    FEATool Multiphysics - FEA & CFD Toolbox

    FEATool Multiphysics is an easy-to-use FEA and CFD Simulation Toolbox

    FEATool Multiphysics (https://www.featool.com) is a fully integrated toolbox for computer aided engineering CAE, finite element analysis & fluid dynamics simulations. With a very easy-to-use GUI, anyone is now able to quickly set up and perform large scale dynamical and complex engineering physics simulations, with coupled fluid flow, heat transfer, structural mechanics, chemical transport, and electromagnetics effects, without having to learn complex programming. In addition to built-in CAD and pre/post-processing, automatic mesh generation, and multi-physics solvers, FEATool also seamlessly integrates the state-of-the-art OpenFOAM [1], SU2, and FEniCS CFD and FEA solvers. ...
    Downloads: 6 This Week
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  • 5
    Euler Pole Calculator (EPC)

    Euler Pole Calculator (EPC)

    A Matlab software to estimate Euler pole parameters

    The EPC software calculates velocities for any points located on the earth’s surface given the Euler pole parameters and estimates the Euler pole parameters given the observed velocities of a set of sites located on a tectonic plate. Since version 2, the software is able to estimate or apply the Plate Translation Rates, as well. Please cite one of the following papers when you use the software: - Goudarzi, M A, Cocard, M, and Santerre, R. 2014."EPC: Matlab Software to Estimate Euler Pole Parameters". GPS Solutions 18 (1): 153–62. ...
    Downloads: 3 This Week
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  • 6
    slab3d

    slab3d

    slab3d is a real-time virtual acoustic environment.

    slab3d is a real-time virtual acoustic environment rendering system. It includes two rendering applications, libraries for spatial auditory display and audio signal processing development, and a set of tools for HRTF analysis and visualization.
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    Downloads: 1 This Week
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  • 7
    Orbit Determination Toolbox (ODTBX)

    Orbit Determination Toolbox (ODTBX)

    Advanced mission simulation and analysis tool

    ...ODTBX functions and utilities are combined in a flexible architecture that allows for modular development of navigation algorithms and simulations. The core ODTBX functionality is realized through a set of estimation commands that incorporate Monte Carlo data simulation, linear covariance analysis, and measurement processing at a generic level.
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    Downloads: 8 This Week
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  • 8
    RenewNet Foundry

    RenewNet Foundry

    Building blocks for the renewable energy industry.

    RenewNet Foundry is a repository for an integrated set of simulation components for system simulation of wind, wave and tidal energy systems.
    Downloads: 0 This Week
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  • 9
    adcptools

    adcptools

    Set of functions to process acoustic Doppler current profiler data

    adcptools is a set of Matlab functions to post-process acoustic Doppler current profiler data. It consists of several low-level function to read out data files and several functions to process data from repeat transect measurements, moored turbulence measurements and horizontal ADCP deployments.
    Downloads: 0 This Week
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  • 10

    VOP post-processing

    Post-processing algorithms for SAR compression

    Here we introduce to algorithms for post-processing of VOP sets. Algorithm 1 reduces the Overestimation for a given set of VOPs. Especially useful to reduce the overestimation in VOP sets calculated with the compression algorithms by Lee et al. and Orzada et al. Algorithm 2 tests a given set of VOPs for redundancy. It can be used to reduce the number of VOPs in a dataset produced by Eichfelder and Gebhardt's algorithm. Especially useful when you have a vendor provided VOP set only.
    Downloads: 0 This Week
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  • 11
    Mathematics

    Mathematics

    Accumulation of mathematical knowledge, matrix numerical optimization

    ...It also extends into computational and algorithmic applications of mathematics, making it a useful reference for both academic study and practical problem-solving. The goal is to provide learners, researchers, and developers with a consolidated source of foundational and advanced mathematical concepts. By gathering a diverse set of topics into one repository, it supports continuous learning and interdisciplinary exploration. Its open source nature allows for community contributions and adaptation to different educational or research needs.
    Downloads: 5 This Week
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  • 12
    ebfformat

    ebfformat

    An Efficient Binary data Format

    EBF, which stands for Efficient Binary Format, is a binary file format for reading and writing binary data easily. Reading writing routines are currently available in C,C++,Fortran,Java, Python, IDL, MATLAB. A program called ebftkpy which has a set of utility functions to work with the .ebf files , e.g., viewing the contents and getting a summary, is also provided. The EBF specification is designed to be concise and easy to understand to make it easier for others to write their own code if needed. It is also designed to simplify the programming of input output routines in different programming languages. ...
    Downloads: 0 This Week
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  • 13
    Sensitizer

    Sensitizer

    A toolset to automate STOP analysis with Zemax OpticStudio

    ...The optical system to analyze is defined in a normal Zemax lens file. The core data structure of SENSITIZER is an optical group, which can be any optical surface in the lens file or a set of subsequent surfaces. These groups will be perturbed by varying their positions relative to the rest of the system (rigid-body-motions) and/or by adding Zernike shape deformations on their front surface. After a certain perturbation is applied, ZOS runs (sequential) raytracing to compute the optical performance such as centroid displacement or wavefront error.
    Downloads: 1 This Week
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  • 14
    SegyMAT is a set of Matlab/Octave m-files to read and write SEG Y data following SEG Y Revision 0 and 1
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    Downloads: 7 This Week
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  • 15
    EigenMS is a normalization method implemented in R (and older version in Matlab) available as a set of two functions that should be used in a sequence. Please download EigenMS.zip file (latest version). Latest version uploaded in October 2017 has a bugfix for single treatment group normalization. Rescaling has been omitted from 2015. EigenMS utilizes SVD to detect bias trends in the data and eliminates them. EigenMS eliminates effects from known and unknown factors and can be utilized for any -omic platform. ...
    Downloads: 0 This Week
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  • 16
    Matlab Toolbox 'Measures of Effect Size'
    A set of Matlab functions which compute effect size statistics and (exact) confidence intervals for a wide range of data analysis situations, including two-sample-, oneway-, twoway- and contrast analyses as well as categorical data in tables.
    Downloads: 0 This Week
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  • 17
    AKtoolbox

    AKtoolbox

    Matlab Toolbox for coevolution analysis of multiple sequence alignment

    AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for MSA. At present, co-evolution methods available in this package are Statistical Coupling Analysis (SCA), Explicit Likelihood of Subset Covariance (ELSC), Mutual Information (MI), Observed Minus Expected Square method (OMES), McLanhlan Based Substitution Correlation (MCBASC), Direct-coupling analysis (DCA) and logR. ...
    Downloads: 7 This Week
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  • 18
    PALM

    PALM

    Probabilistic natural mapping for gene based association study.

    PALM is a software that conducts gene-based association analysis. PALM exploits Hidden Markov Models (HMM) to capture the inner genomic structures. Then, unique gene features (termed "palm prints") are extracted for each gene set by calculating the natural gradient. Then palm-prints are tested with chi-square significance test.
    Downloads: 0 This Week
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  • 19

    mflab

    modflow laboratory

    Matlab based scripting to set up, run and analyze groundwater model using (different versions of) MODFLOW (+SWI), MODPATH6, MT3DMS and SEAWAT.
    Downloads: 0 This Week
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  • 20
    lasYmat provides a set of Matlab routines for reading and writing LAS files. LAS is a world wide Oil & Gas industry standard for distribution of Well Log data.
    Downloads: 0 This Week
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  • 21

    EyeBallGUI

    a tool for interactively viewing & marking multi-channel biosignals

    ...The purpose of EyeBallGUI is to facilitate the eyeballing of multi-channel biosignals for the purpose of artefact rejection (or any other binary grouping). EyeBallGUI displays a set of time-series signals in a MATLAB Figure window, allowing the user to visually inspect and interact with the data via the mouse and keyboard in order to mark data as bad/rejected. The tool can be used to visualize a wide range of data types to make any kind of binary decision about segments of data. However, the motivation for the tool is to facilitate the visualization of multi-channel EEG data for the purpose of artefact rejection. ...
    Downloads: 0 This Week
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  • 22
    The major aim of the Psychtoolbox 3 wrapper is to provide a set of basic tools that allow programming novices the use of the Psychophysics Toolbox without limiting the power and flexibility of the Psychophysics Toolbox and MATLAB.
    Downloads: 0 This Week
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  • 23

    Face Recognition System

    Face Recognition System Matlab source code

    Research on automatic face recognition in images has rapidly developed into several inter-related lines, and this research has both lead to and been driven by a disparate and expanding set of commercial applications. The large number of research activities is evident in the growing number of scientific communications published on subjects related to face processing and recognition. Index Terms: face, recognition, eigenfaces, eigenvalues, eigenvectors, Karhunen-Loeve algorithm.
    Downloads: 0 This Week
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  • 24

    nail_systems_biology

    NAIL is a toolset for network analysis in the life sciences

    The NAIL (Network Analysis and Inference Library) project is a set of tools for solving problems in the life sciences using network (graph) approaches. NAIL includes methods for creating networks, analysing and comparing networks, and for visualising or presenting the results. These methods are designed as self-contained platform-independent components which can be called either from another program, or from a command line.
    Downloads: 0 This Week
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  • 25
    SuperpixelMethod

    SuperpixelMethod

    Implementation of phase and amplitude modulation methods for the DMD

    This is a tool set for controlling digital micromirror devices for creating digital holograms and general optical field patterns. Hardware requirements include a laser and a DMD development board. A description of the use of the software in digital holography can be found here: http://cops.nano-cops.com/publications/superpixel-based-spatial-amplitude-and-phase-modulation-using-digital-micromirror-devic This software was developed with support from ERC and FOM.
    Downloads: 3 This Week
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