Showing 26 open source projects for "image analysis"

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  • 1

    coDDMaker

    distributions and co-distribution 2D signal analysis

    coDDMaker is a MATLAB® App Designer's software program for the guided analysis of the distributions and co-distribution of marker pairs in 2D image.
    Downloads: 0 This Week
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  • 2
    DDMaker

    DDMaker

    Local Distribution Density Map Maker

    DDMaker perform local density analysis and generates pseudocolor maps of the spatial distribution of imaged cellular structures in 2D images, starting from either RGB color, grey level or binary images. DDMaker local density analysis permit to selectively denoise the signal, visualize and quantify its distribution and threshold the image basing on local density.
    Downloads: 1 This Week
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  • 3
    ANDTool

    ANDTool

    Analysis Nuclei DAB (AND) Tool

    Analysis Nuclei DAB (AND) Tool is a Graphical User Interface (GUI) to analyse microscopy images representing cells with nuclei stained using DAB dyes. The tool requires as input the original RGB images, and the FastRed, FastBlue, DAB channel, easily obtained using the Fiji function: "ImageJ" -> "Image" -> "Colour Deconvolution" -> "FastRed FastBlue DAB" Then, the tool first segment the nuclei using the FastBlue channel and the DAB channel, and then computes statistics by subdividing the sample in three regions according to the FastRed channel: a dark-red ROI, a light-pink ROI and a white ROI. ...
    Downloads: 0 This Week
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  • 4
    TauFactor

    TauFactor

    MatLab App for calculating the tortuosity factor of microstructure

    Please contact the author at sjc08@ic.ac.uk for any questions or if you wish to cite this application in a academic study. Journal paper available here: http://www.sciencedirect.com/science/article/pii/S2352711016300280 TauFactor is a MatLab application for efficiently calculating the tortuosity factor, as well as volume fractions, surface areas and triple phase boundary densities, from image based microstructural data. The tortuosity factor quantifies the apparent decrease in...
    Downloads: 4 This Week
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  • 5
    Brain imaging software produced by the Brain Research Imaging Centre of The University of Edinburgh.
    Downloads: 51 This Week
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  • 6
    UmUTracker

    UmUTracker

    A MATLAB program for 2D particle tracking or 3D DHM based tracking.

    We present a versatile and fast MATLAB program (UmUTracker) that automatically detects and tracks particles by analyzing long video sequences acquired by either light microscopy or digital holography microscopy (DHM). Our program finds the 2D particle center position using an isosceles triangle transform and the axial position by a fast implementation of Rayleigh-Sommerfeld numerical reconstruction algorithm using a one dimensional radial intensity profile. *Updates v1.1: 2017/11/21- Bug...
    Downloads: 0 This Week
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  • 7
    Qu is a MATLAB toolbox for the visualization and analysis of N-dimensional datasets targeted to the field of biomedical imaging. It supports several microscopy image formats and offers a plugin mechanism and a consistent API for easy extension.
    Downloads: 0 This Week
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  • 8
    MRiLab

    MRiLab

    A Numerical MRI Simulation Platform

    The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time...
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    Downloads: 13 This Week
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  • 9
    ARIA

    ARIA

    Retinal vessel detection using MATLAB

    NOTE: This project is now hosted at GitHub. Please follow the link below to visit its new home.
    Downloads: 6 This Week
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  • 10
    MORPHE

    MORPHE

    MORphological PHenotype Extraction

    MORphological PHenotype Extraction (MORPHE) is a suite of automated image processing, visualization, and classification algorithms to facilitate the analysis of heritable and clonal red-to-green transitions that occurred during the growth of a colony.
    Downloads: 0 This Week
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  • 11
    SPIW - Scanning Probe Image Wizard

    SPIW - Scanning Probe Image Wizard

    Scanning Probe Image Wizard - MATLAB Toolbox

    SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution. SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images. For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific...
    Downloads: 0 This Week
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  • 12
    AEO-Light 1.1

    AEO-Light 1.1

    Version 1.1 is no longer supported.

    Version 1.1 is no longer supported. Please see the new version at https://usc-imi.github.io/aeo-light/ Description for 1.1 continues below: AEO-Light 1.1 is an open-source software application that takes a digital scan of motion picture film with optical sound tracks and directly reproduces the audio, producing as a result a synchronized sound film file. Funded by a grant from the National Endowment for the Humanities and by the University of South Carolina.
    Downloads: 0 This Week
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  • 13

    YASAV

    SRAM Memory Aging Simulator for Image/Video Processing Systems

    YASAV is a GUI-based tool for fast analysis and visualization of SRAM based memory aging. The customization is done for YUV videos to realize use cases for image/video processing applications. This tool accepts SRAM scratchpad memory configuration and user parameters (like test data sets, required aging years etc.) and provides aging estimates in terms of Static Noise Margin (the metric of SRAM aging estimation) and in-depth duty cycle analysis.
    Downloads: 0 This Week
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  • 14
    Qi - Quantitative Imaging (PIV and more)

    Qi - Quantitative Imaging (PIV and more)

    A collection of MATLAB tools for PIV, PTV, particle sizing, and more.

    Qi is a collection of MATLAB tools for the quantitative analysis of flow field images. Our Particle Image Velocimetry (PIV) tool, prana, implements a Robust Phase Correlation kernel for PIV analysis, and now includes Particle Tracking Velocimetry and sizing tools. Tools for pressure calculation, proper orthogonal decomposition (POD), and 3d imaging are under development.
    Downloads: 0 This Week
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  • 15

    matImage

    An image processing and analysis library for Matlab

    MatImage is a Matlab library for image processing and analysis in 2D and 3D. It contains more than 250 fonctions for image enhancement, filtering, analysis, or visualisation, as well as for creating basic test shapes. It is built as a complement of the Mathworks image processing toolbox (IPT). Project is being transfered to GitHub: http://github.com/dlegland/matImage
    Downloads: 0 This Week
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  • 16
    MatrixUser

    MatrixUser

    A Multi-functional GUI-based Program for Image Processing and Analysis

    ...Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or tailored for processing two-dimensional matrix. The MatrixUser is a software package which features functions designed and optimized specifically for manipulating multidimensional real or complex data matrix. MatrixUser provides a nice graphical environment for easily performing image analysis tasks including multidimensional image display, matrix (image stack) processing and rendering etc. ...
    Downloads: 0 This Week
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  • 17
    A Matlab toolbox for calibrating the Kinect Sensor. It provides functions to jointly calibrate the depth sensor with a color camera as well as to generate a depth map for the color image and reproject the points in metric coordinates.
    Downloads: 1 This Week
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  • 18
    LAVA for AFM

    LAVA for AFM

    Lloyd's Algorithm-based Volumetric Analysis for AFM Images

    This MATLAB-based program enables analysis of AFM images. In particular, it allows the user to measure the volume of all distinguishable features in an image and to isolate and sort those particles. As the name implies, LAVA uses Lloyd's Algorithm, also known as k-means sorting, to identify a small set of volumes representative of the actual distribution of particle in the image.
    Downloads: 0 This Week
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  • 19
    Malimpa stands for MAtlab Library for IMage Processing and Analysis. It provides functions for 2D/3D grascale/color image creation, filtering, or measurement. It requires, and complements Matlab Image Processing Toolbox. Important notice: the project is now hosted in GitHub, https://github.com/dlegland/matImage
    Downloads: 0 This Week
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  • 20
    Open Source Particle Image Velocimetry

    Open Source Particle Image Velocimetry

    Open Source Particle Image Velocimetry and PIV Analysis

    OpenPIV is an initiative of scientists to develop a software, algorithms and methods for the state-of-the-art experimental tool of Particle Image Velocimetry (PIV) which are free, open source, and easy to operate.
    Downloads: 0 This Week
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  • 21
    Gafgui
    A Matlab code to characterize and analyze Gafchromic film for radiotherapy applications. Single or dual color analysis (respectively for EBT or EBT2 film types). Accurate uncertainty estimations. Requirements: Matlab (min. ver. 2007a), Image toolbox.
    Downloads: 0 This Week
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  • 22
    The purpose of this program is to teach a computer to classify plants via their leaves. You just need to input the image of a leaf(acquired from scanner or camera), then the computer can tell you what kind of plant it is.
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    Downloads: 25 This Week
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  • 23
    Image Processing/Tracking Software for off-line analysis of Field Biology Videos/Recordings.
    Downloads: 0 This Week
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  • 24
    A collection of Matlab functions and scripts for computing the saliency map for an image, for determining the extent of a proto-object, and for serially scanning the image with the focus of attention.
    Downloads: 3 This Week
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  • 25
    MADR is a framework for analysis of series of images (2D data) where each pixel position have the same meaning in every image. Based on a statistical analysis, the images can then be visualised together with parameters from the analysis.
    Downloads: 0 This Week
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