Search Results for "scoring"

A fork of AutoDock Vina that is customized to better support scoring function development and high-performance energy minimization. smina is maintained by David Koes at the University of Pittsburgh and is not directly affiliated with the AutoDock project.

Slot Math Toolkit is an open-source Python library for slot machine math: RTP verification via Monte Carlo simulation, Bonus Buy ROI analysis, variance scoring (1-5 scale), and single-session simulation. Sample data for Sugar Rush series (Original, 1000, Super Scatter), Sweet Bonanza, Gates of Olympus, Mega Joker, Ugga Bugga. For the full Sugar Rush Super Scatter methodology including paytable breakdowns and Super Scatter multiplier ranges (x100/x500/x5000/x50000), see the detailed mechanics breakdown at https://sugarrush-super-scatter.com/ Core features: - RTP Calculator with 95% confidence intervals - Bonus Buy ROI Analyzer (x100 standard, x500 super) - Variance Scorer via coefficient of variation - Session Simulator with bankroll, bet size, stop-loss Install: pip install slot-math-toolkit CLI: slot-math rtp --slot sugar_rush_super_scatter --spins 100000 41 tests, 94% coverage. ...

Gen3D is an application designed to determine three-dimensional genome and chromosome models. It uses chromosomal contact data to construct three-dimensional conformations. This method can generate three-dimensional chromosomal models satisfying a large portion of chromosomal contacts. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project...

...The program can handle the analysis for screens without replicates as well as with replicates. For comparison purposes, non-SSMD-based methods such as percent activity, z-score, and t-test are also provided as scoring options. Version 2.1 released: several bugs fixed. Version 3.0 released for Windows and Mac: experiment-wise analysis option, map to all samples option (no hit cut-off needed), percent activity for replicates option and .ai output format are added

...ProtDraw creates flexible, easily-interpretable and portable illustrations of the domain structures of input sequences. ProtDraw is accompanied by makeProtDraw, a helper program which runs hmmer3 on a specified set of hidden Markov models and formats results for ProtDraw. Highest-scoring domains are selected in cases of overlap. Domain drawings may be organized by sequence classification.

A software for automatic peak selection and scoring of AFLP data tables witten by Wolfgang Arthofer, University of Innsbruck. Austria.

MendelScan is a tool for prioritizing candidate variants in family-based studies of inherited disease.

The Cancergrid Image Scorer is web-based application for the management and storage of tissue microarray (TMA) images and the associated metadata. The application enables the user to navigate a grid of TMA core images within a slide, zoom and pan around an image, and enter a score constrained to a specific scoring system. The submitted scores are scored in the eXist open source database, in an XML format, which is compatible with existing TMA standards, and thus allow the data to be archived and re-used in future analysis.

...I distribute Javamony, as I did Pysimony, hoping that it will be of educational value to someone else or at least vaguely amusing. Upcoming features will be: - Support for Amino Acid sequences - Support for additional file formats (e.g. Nexus) - Multithreading - Additional scoring methods (e.g. maximum likelihood)

UPDATE: The latest version of NNScore1 can be found here: http://git.durrantlab.com/jdurrant/nnscore1 The latest version of NNScore2 can be found here: http://git.durrantlab.com/jdurrant/nnscore2 ================ NNScore is a scoring function for characterizing the potency of receptor-ligand complexes. It is based on neural networks, computational models that simulate the microscopic organization of the brain.

On The Mark is a video and image scoring system that allows one to mark any number of events and durations through a simple, easy-to-use graphical interface.

This is a MATLAB toolbox for the quality control and scoring of EMAP and SGA genetic interaction data. It includes a graphical user interface and some automatic plot-generating tools.

C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture.

MatrixGen is a Bioinformatics application used to generate scoring matrices from analysis of aligned Amino Acid and DNA data sets. These matrices can then be used by Clustal to generate more accurate alignments. Based upon the Henikoff BLOSUM method.