Showing 119 open source projects for "packages"

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  • 1
    QuTiP

    QuTiP

    QuTiP: Quantum Toolbox in Python

    QuTiP is open-source software for simulating the dynamics of open quantum systems. The QuTiP library depends on the excellent Numpy, Scipy, and Cython numerical packages. In addition, graphical output is provided by Matplotlib. QuTiP aims to provide user-friendly and efficient numerical simulations of a wide variety of Hamiltonians, including those with arbitrary time-dependence, commonly found in a wide range of physics applications such as quantum optics, trapped ions, superconducting circuits, and quantum nanomechanical resonators. ...
    Downloads: 13 This Week
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  • 2
    awesome-single-cell

    awesome-single-cell

    Community-curated list of software packages and data resources

    Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data.
    Downloads: 4 This Week
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  • 3
    Gonum

    Gonum

    Set of numeric libraries for the Go programming language

    Gonum is a set of numeric libraries for the Go programming language. It contains libraries for matrices, statistics, optimization, and more. Gonum is a set of packages designed to make writing numerical and scientific algorithms productive, performant, and scalable. Gonum contains libraries for matrices and linear algebra; statistics, probability distributions, and sampling; tools for function differentiation, integration, and optimization; network creation and analysis; and more. We encourage you to get started with Go and Gonum if you are tired of sluggish performance, and fighting C and vectorization, and also if you are struggling with managing programs as they grow larger. ...
    Downloads: 4 This Week
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  • 4
    R packages (maintained by YJLEE)

    R packages (maintained by YJLEE)

    R packages for PK/PD modeling , BE/BA, drug stability, ivivc, etc.

    These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM).
    Downloads: 46 This Week
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    PyTorch Geometric

    PyTorch Geometric

    Geometric deep learning extension library for PyTorch

    ...In addition, it consists of an easy-to-use mini-batch loader for many small and single giant graphs, a large number of common benchmark datasets (based on simple interfaces to create your own), and helpful transforms, both for learning on arbitrary graphs as well as on 3D meshes or point clouds. We have outsourced a lot of functionality of PyTorch Geometric to other packages, which needs to be additionally installed. These packages come with their own CPU and GPU kernel implementations based on C++/CUDA extensions. We do not recommend installation as root user on your system python. Please setup an Anaconda/Miniconda environment or create a Docker image. We provide pip wheels for all major OS/PyTorch/CUDA combinations.
    Downloads: 2 This Week
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  • 6
    JuMP

    JuMP

    Modeling language for Mathematical Optimization

    JuMP is a modeling language and collection of supporting packages for mathematical optimization in Julia. JuMP makes it easy to formulate and solve a range of problem classes, including linear programs, integer programs, conic programs, semidefinite programs, and constrained nonlinear programs. JuMP is used to solve large-scale inventory routing problems at Renault, schedule trains at Thales Inc., plan power grid expansion at PSR, and route school buses.
    Downloads: 4 This Week
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  • 7
    Hecke.jl

    Hecke.jl

    Computational algebraic number theory

    Hecke is a software package for algebraic number theory maintained by Claus Fieker, Tommy Hofmann and Carlo Sircana. It is written in julia and is based on the computer algebra packages Nemo and AbstractAlgebra. Hecke is part of the OSCAR project and the development is supported by the Deutsche Forschungsgemeinschaft DFG within the Collaborative Research Center TRR 195.
    Downloads: 3 This Week
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  • 8
    Integrals.jl

    Integrals.jl

    A common interface for quadrature and numerical integration

    Integrals.jl is an instantiation of the SciML common IntegralProblem interface for the common numerical integration packages of Julia, including both those based upon quadrature as well as Monte-Carlo approaches. By using Integrals.jl, you get a single predictable interface where many of the arguments are standardized throughout the various integrator libraries. This can be useful for benchmarking or for library implementations since libraries that internally use a quadrature can easily accept an integration method as an argument.
    Downloads: 4 This Week
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  • 9
    Arduino core support for STM32

    Arduino core support for STM32

    STM32 core support for Arduino

    This repo adds the support of STM32 MCU in Arduino IDE. This porting is based on STM32Cube MCU Packages including the HAL hardware abstraction layer, enabling portability between different STM32 devices via standardized API calls. The Low-Layer (LL) APIs, a lightweight, optimized, expert-oriented set of APIs designed for both performance and runtime efficiency. CMSIS device definition for STM32. Arduino.cc IDE allows to add easily new board thanks the "Boards Managers".
    Downloads: 11 This Week
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  • 10
    SciPy

    SciPy

    SciPy library main repository

    This is the main repository for the SciPy library, one of the core packages that make up the SciPy stack. SciPy is an open source software used in the fields of mathematics, science, and engineering, with modules for statistics, optimization, integration, linear algebra, signal and image processing, and many more. The SciPy library contains many of the user-friendly and efficient numerical routines, including those for numerical integration, interpolation, and optimization. ...
    Downloads: 11 This Week
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  • 11
    broom

    broom

    Convert statistical analysis objects from R into tidy format

    broom is part of the tidymodels ecosystem that converts statistical model outputs (e.g. from lm, glm, t.test, lme4, etc.) into tidy tibbles — standardized data frames — using functions tidy(), glance(), and augment(). These are easier to manipulate, visualize, and report programmatically.
    Downloads: 1 This Week
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  • 12
    Elasticsearch Node.js client

    Elasticsearch Node.js client

    Elasticsearch client library for Node.js

    ...If you are using multiple versions of Elasticsearch, you need to use multiple versions of the client. In the past, install multiple versions of the same package was not possible, but with npm v6.9, you can do that via aliasing. You will require the packages from your code by using the alias you have defined.
    Downloads: 5 This Week
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  • 13
    DifferentialEquations.jl

    DifferentialEquations.jl

    Multi-language suite for high-performance solvers of equations

    ...At the same time, it wraps the classic C/Fortran methods, making it easy to switch over to them whenever necessary. Solving differential equations with different methods from different languages and packages can be done by changing one line of code, allowing for easy benchmarking to ensure you are using the fastest method possible.
    Downloads: 3 This Week
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  • 14
    Swift Numerics

    Swift Numerics

    Advanced mathematical types and functions for Swift

    Swift Numerics is a foundational library that extends the Swift standard library with essential numerical protocols, types, and functions needed for scientific and systems programming. It defines generic abstractions over real and complex numbers so algorithms can be written once and work across concrete floating-point types. The package includes RealModule utilities and a full Complex type with the expected arithmetic and transcendental functions, bridging a long-standing gap for numerics...
    Downloads: 2 This Week
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  • 15
    TURF

    TURF

    A modular geospatial engine written in JavaScript

    ...Takes advantage of the newest algorithms and doesn't require you to send data to a server. TypeScript definitions are packaged with each module. No DefinitelyTyped packages required. Turf uses GeoJSON for all geographic data. Turf expects the data to be standard WGS84 longitude, latitude coordinates. Check out geojson.io for a tool to easily create this data.
    Downloads: 3 This Week
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  • 16
    statsmodels

    statsmodels

    Statsmodels, statistical modeling and econometrics in Python

    statsmodels is a Python module that provides classes and functions for the estimation of many different statistical models, as well as for conducting statistical tests, and statistical data exploration. An extensive list of result statistics are available for each estimator. The results are tested against existing statistical packages to ensure that they are correct. The package is released under the open source Modified BSD (3-clause) license. Generalized linear models with support for all of the one-parameter exponential family distributions. Markov switching models (MSAR), also known as Hidden Markov Models (HMM). Vector autoregressive models, VAR and structural VAR. ...
    Downloads: 1 This Week
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  • 17
    LAMMPS

    LAMMPS

    Public development project of the LAMMPS MD software package

    ...It supports many interaction models, including pair potentials, many-body potentials, reactive force fields, bonded interactions, long-range electrostatics, and user-extendable packages. LAMMPS is script-driven, so users can define simulation geometry, force fields, integration methods, output, and analysis behavior through input files. Its main value is combining broad scientific flexibility with scalable parallel performance for complex molecular and mesoscale simulations.
    Downloads: 0 This Week
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  • 18
    OrdinaryDiffEq.jl

    OrdinaryDiffEq.jl

    High performance ordinary differential equation (ODE)

    ...At the same time, it wraps the classic C/Fortran methods, making it easy to switch over to them whenever necessary. Solving differential equations with different methods from different languages and packages can be done by changing one line of code, allowing for easy benchmarking to ensure you are using the fastest method possible.
    Downloads: 0 This Week
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  • 19
    Octave Forge

    Octave Forge

    A collection of packages providing extra functionality for GNU Octave

    Octave Forge is a central location for collaborative development of packages for GNU Octave. The Octave Forge packages expand Octave's core functionality by providing field specific features via Octave's package system. See https://octave.sourceforge.io/packages.php for a list of all available packages. GNU Octave is a high-level interpreted language, primarily intended for numerical computations. It provides capabilities for the numerical solution of linear and nonlinear problems, and for performing other numerical experiments. ...
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    Downloads: 909 This Week
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  • 20
    Mathpaqs

    Mathpaqs

    A collection of mathematical packages in pure Ada

    Various mathematical packages including algebra, finite elements, random variables, probability dependency models, unlimited integers. Pure Ada, fully portable. More information on... http://mathpaqs.sf.net Alire crate: https://alire.ada.dev/crates/mathpaqs Mirror: https://github.com/zertovitch/mathpaqs
    Downloads: 12 This Week
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  • 21
    DeepChem

    DeepChem

    Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, etc

    DeepChem aims to provide a high-quality open-source toolchain that democratizes the use of deep learning in drug discovery, materials science, quantum chemistry, and biology. DeepChem currently supports Python 3.7 through 3.9 and requires these packages on any condition. DeepChem has a number of "soft" requirements. If you face some errors like ImportError: This class requires XXXX, you may need to install some packages. Deepchem provides support for TensorFlow, PyTorch, JAX and each requires an individual pip Installation. The DeepChem project maintains an extensive collection of tutorials. ...
    Downloads: 5 This Week
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  • 22
    Avogadro

    Avogadro

    An intuitive molecular editor and visualization tool

    Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture.
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    Downloads: 1,036 This Week
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  • 23
    luscus

    luscus

    molecular editor and viewer

    ...The program is developed as a graphical interface for MOLCAS program package, however it's adaptive nature makes possible using luscus with other computational program packages and chemical formats. If you use this program, please cite: G. Kovačević, V. Veryazov, J. Cheminformatics, 7 (2015) 1-10; DOI: 10.1186/s13321-015-0060-z
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    Downloads: 35 This Week
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  • 24
    myGPS Arduino Nano DIY

    myGPS Arduino Nano DIY

    Build your own GPS unit

    To develop an Arduino Nano based GPS module that is low cost, portable and can be used in Astronomy. (c) Copyright Robert Brown 2014-2024. All Rights Reserved. Permission is granted for personal and Academic use only. Code or portions of code may not be copied or used without appropriate credit given to author.
    Downloads: 5 This Week
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  • 25
    stkpp

    stkpp

    C++ Statistical ToolKit

    STK++ (http://www.stkpp.org) is a versatile, fast, reliable and elegant collection of C++ classes for statistics, clustering, linear algebra, arrays (with an Eigen-like API), regression, dimension reduction, etc. Some functionalities provided by the library are available in the R environment as R functions (http://cran.at.r-project.org/web/packages/rtkore/index.html). At a convenience, we propose the source packages on sourceforge. The library offers a dense set of (mostly) template classes in C++ and is suitable for projects ranging from small one-off projects to complete data mining application suites.
    Downloads: 0 This Week
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