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Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737.
We will create index for you if you tell us your interested species (j.an@qut.edu.au).
download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files"
please find miRPlant in sourceforge for plant miRNA prediction.
Java (6&7) Code Coverage Plugin for NetBeans, based on JaCoCo
NetBeans module that provides JaCoCo code coverage (Java7 compatible). For Ant based JavaSE projects. Maven and Gradle support may be added later.
WARNING: Binary files have been removed. They're now on a NetBeans update center. Please check https://github.com/jonathanlermitage/tikione-jacocoverage#download-stable-and-dev-builds for details.
~Jonathan Lermitage <jonathan.lermitage@gmail.com>
import and store ECG, associate to clinical data, automatic HRV
http://www.youtube.com/watch?v=AOzpNMC-FXU
This multi-platform application will enable the user to import digital CSV ECGs at any sampling rate and store them in an encrypted local DB along with relevant clinical data of the patient.
It also performs automatic QRS complex detection and RR interval classification showing the output in a visual chart that the user can edit to correct sources with artifacts or pats with bad detections.
This project was developed using Netbeans 7.3...
A software framework to build maps for Neurospora crassa genome based on probabilistic models of meiotic recombination. A netbeans platform application is built to incorporate the computations.
Project issues are mainatined at https://freecode4susant.atlassian.net/browse/GENOMEMAP
CapCode is a navigation software for sailors for cruising or regatta. - Reads NMEA 183 data (instruments, GPS, AIS). Implements computation of the VMG , tracing on RNC and ENC (S-57) charts. Display the polar on the chart, future position of the ship. Weather information acquired from grib files are also displayed in the navigation view.
developed as an Eclipse RCP in its versions 2.x.x
FCalculator es capaz de realizar cálculos y hacer conversiones de algunas fórmulas matemáticas y físicas. Es portable al estar escrito en Java 100%. Su interfaz gráfica está basada en Swing y es totalmente gratuita. Esta desarrollada con la versión 6 de Java y NetBeans como IDE.
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I2C4Java is a simple I2C-Java Demo. We use the Devantech USB-I2C Interface and the Microchip PICkit I2C Demoboard. The tar-file contains the complete Netbeans-Project and a compiled Jar-File. To start use i2c4java.sh or i2c4java.bat (Windows).
Eprog 27011 GUI is a simple Java-App for the old Renkforce Eprommer Eprommaster 27011. The tar-file contains the complete Netbeans-Project and a compiled Jar-File. To start use eprog.sh or eprog.bat (Windows).
Sistema echo en java para pasar un examen especial de matematicas V, con la ayuda de la libreria JEP. Realiza la integracion y derivaicion de algunas funciones matematicas. Hecho en Netbeans IDE. Todo confines eucacionales si alguien puede contribuir
Représentation Bode (asymptotique et réelle), Nyquist, Black, d'éléments du premier et du second ordre. Le programme est en Java developpé avec NetBeans.
Viperfish is intended for the sailor looking to improve his weather forecasting. Viperfish provides the ability to visualise and modify GRIB (weather prediction) files, it can plot routes and provides routing based on coming weather and boat performance.
Track This! Hurricane Tracker is Java/Swing based project for weather enthusiasts and the like to help during Hurricane season. I have not seen a solid "free" hurricane tracker yet this is an important piece of software.
retep is a collection of Java API's covering PDF, XML, J2EE , Swing and now NetBeans modules for displaying astronomical maps, controlling modern "Go-To" telescopes - all in java., and accessing online databases.