Search Results for "idea"
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Showing 37 open source projects for "idea"
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kallisto
Near-optimal RNA-Seq quantification
kallisto is a program for near-optimal quantification of transcript abundances from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the idea of using pseudoalignment to quickly determine reads and targets’ compatibility, with no need for alignment. According to benchmarks done on a Mac desktop computer, kallisto can quantify 30 million human bulk RNA-seq reads in less than 3 minutes with just the read sequences and a transcriptome index, that in itself can take more than 10 minutes to build. ... -
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CADAM
CADAM is the open source text-to-CAD web application
CADAM is an open-source “text-to-CAD” web application that turns natural-language prompts into parametric 3D models, targeting a workflow where you describe what you want and the system produces editable geometry. It is designed around a browser-first experience, so users can iterate quickly without installing a heavyweight desktop CAD suite for every experiment. A key idea is that the generated output is parametric and scriptable, enabling repeatable edits and variations rather than a one-off mesh result. The project integrates modern web tooling and a backend stack to manage sessions, model generation requests, and persisted outputs, making it usable as an actual product rather than only a demo. It’s also built to support an agentic workflow, where the system can refine outputs over multiple steps, bridging the gap between intent (“a bracket with four mounting holes”) and precise geometry. -
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IntervalRpnCalculator
An HP RPN calculator with interval output
...It attempts to mimic the functionality of an HP ReversePolishNotation [RPN] calculator with the added enhancement of interval output. So along with your answer, you get a good idea of its trustworthiness. This app uses GAOL, a C++ library to perform arithmetic with floating-point intervals. -
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"SmartSoft" provides a component based approach to develop robotics software (http://smart-robotics.sourceforge.net/). This project provides a Message based (build on ACE from Douglas C. Schmidt) implementation of the SmartSoft idea.
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C++QED
A framework for simulating open quantum dynamics
...It has demonstrated the ability to simulate full Master equation of up to several thousand, and quantum trajectories of up to several hundred thousand dimensions. The basic idea is to allow users to build arbitrarily complex interacting quantum systems out of free subsystems and interactions (elements), and simulate their time evolution with a number of available time-evolution drivers. C++QEDv2 specifies a small grammar to describe composite quantum systems. Apart from providing a number of elements out of the box, there are tools which facilitate the implementation of new elements. ... -
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Our idea is to deploy a society of computational agents that collaborate in order to achieve the shared goal of decrypting a chunk of ciphertext or recovering a password from an hash by means of a dictionary-based attack.
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TEESer
Tool for Engineering Emergent Selforganizing bEhavioR
...It contains tools for analysis, tuning, macroscopic probing and simulations of distributed systems. Library of tools can be extended and everybody is encouraged to provide and share its tools with the community. The main idea is to provide application designers ability to seamlessly use tools which are helpful to design self-organizing behavior. Designers can continue to use their domain tools such as favorable simulator and by pluging it into the framework can take advantage of distributed simulations in the grid, various analyzers, optimizers (particle swarm optimization, genetic algorithms, ...). ... -
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lottie vectors
Create, display and process 2D vectors in a 3D window.
Lottie Vectors is an application for Matlab that alows you to do some pretty neat things -with vectors. More exactly -displaying them in ways that hopefully will allow you to explore and better understand your vector data. The basic idea is simple, take a vector defined in one of a few different types of data formats and map it on the screen. Add another vector and you start to form a 'route'. Each route or position vector can be accompanied with a 'force' vector. This can be used to show something acting on a position with direction and magnitude. Finally you can give each position a tag to display on screen. ... -
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Nutrition Tables
Nutrition Investigator
...The information in this file was obtained from: Source (or Adapted from, as appropriate): Canadian Nutrient File, Health Canada, 2010 and other sources. This file gives an idea of which nutrient could be more likely found in fair quantities in some product. Use that file as a reference tool. Do not make any diet plans based on this information only, since the value of each nutrient in any product is given averaged and do not mirrors the exact number in product that you consume. DISCLAIMER Here "this file" means - this file and links within. ... -
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The Wily DNA Editor
a tool to master DNA sequences, plasmids and restriction digests
The Wiley DNA Editor is a simple tool to handle DNA sequence information up to 100 kbp using java script in your browser window. The main idea is to install nothing but start cloning. Here we handle the development and the bug reports. The Wiley DNA Editor can be used from our homepage - or the files available in the download section. -
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Map Extracts
Map Extracts From OSM
This Repo contains map extracts of different states from the Open Street Maps. Since, OpenStreetMap's own servers run entirely on donated resources. They have strictly limited capacity. So, it will be a bad idea to create tiles from their Servers or Use/Link Them Directly. Therefore, these extracts contains tiles all according to the States and Cities (With increasing number of tiles) for use in offline mode. You may use these extracts for any purpose as long as you credit the Open Street Maps Contributors. Please refer to this link for more information http://www.openstreetmap.org/copyright -
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Point Cloud Skinner for Blender
Python script (addon) for Blender to skin point cloud (verts to face).
...This is a Python script for Blender 2.6x or later and allows you to create a surface from just a cloud of vertices. You can get a complete 3D mesh with faces on it out of just a point cloud that has only vertices and no faces. Please watch the video to get the idea of what the script can do for your artwork. Features: This script, Point Cloud Skinner can skin a cloud of vertices, which means to create a 3D surfaced mesh out of just a cloud of vertices that has no faces. It can skin any shapes of point clouds, such as a surveyed geography point cloud that represents a landform somewhere, a fluid volumetric point cloud obtained by numerical fluid simulation, or anything you like. ... -
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Shoal
A lot of fish in a shoal, in a gigantic scientific ocean.
...Shoal Shell aim at provide the modelling tool and the debugging tool for the GCModeller virtual cell modelling, And from the extendible library package, shoal shell can manage to accomplish the entire modelling job for any other bacteria species. Shoal Shell Project needs grownup I'm just a student in the university, and the shoal shell just in its begining, if you have any idea about shoal, please contact me from xie.guigang@gmail.com. The Shoal shell needs your professional advice. Try get some help (if you want build the shoal library by yourself): https://sourceforge.net/p/shoal/wiki/Shoal%20Developer%20Guide/ -
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BiomeNet
BAYESIAN INFERENCE OF METABOLIC DIVERGENCE AMONG MICROBIAL COMMUNITIES
...To infer the structure of community-level metabolic interactions, BiomeNet applies a mixed-membership modelling framework to enzyme abundance information. The basic idea is that the mixture components of the model (metabolic reactions, subnetworks, and networks) are shared across all groups (microbiome samples), but the mixture proportions vary from group to group. Through this framework, the model can capture nested structures within the data. BiomeNet is unique in modeling each metagenome sample as a mixture of complex metabolic systems (metabosystems). -
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Functional Mechanism
Regression Analysis under Differential Privacy
Functional Mechanism is a differentially private method designed for a large class of optimization-based analyses. The main idea is to enforce epsilon-differential privacy by perturbing the objective function of the optimization problem, rather than its results. Please cite the following paper if you choose to use this code: J. Zhang, Z. Zhang, X. Xiao, Y. Yang, and M. Winslett. Functional Mechanism: Regression Analysis under Differential Privacy. PVLDB 5(11):1364-1375, 2012. -
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RFXCAM
A CAD/CAM Package for CNC GCode Creation
RFXCAM is an opensource CAD / CAM package targeted at CNC machines (Mills, routers...). The idea is to create the basic interface for geometry manipulation and toolpath creation. Heavy python plugin support will allow a future community to create a vast selection of unique plugins for added functionality specific to their needs. Tutorial 1: https://www.youtube.com/watch?v=bNvE2H8b6Yc&feature=youtu.be -
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Network Emulator
Distributed Network emulation tool for high rate packet
I need your help: In order to make this framework easier and more useful, I need your contribution. The idea behind this framework is to develop a GUI like GNS3 and make this framework more stable. So if you are interested and have C/C++ programming skills, please contact me at zahid.med@gmail.com This framework allows to emulate a network by managing ethernet packets coming from two kind of interfaces: UDP and virtual network card. -
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Laboratory notebook using version control system and independent date-time stamping (as notarization), in order to ensure record accountability, auditing, and conforming to US FDA 21 CFR 21's rule on electronic records. Please kindly rate this application or drop me an email at [ mauriceling AT acm DOT org ] so that I can hear from you. Otherwise, I have no idea who the users are. Please kindly help.
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The Unicode and Texteme Ontologies
Ontologies of Unicode characters, textemes, and text properties
...These ontologies provide the basis for a formal description of written signs not contained in Unicode, but also of text properties that describe new signs or existing Unicode characters. The main idea is to provide an ontological framework upon which written signs (textemes) and their properties can be defined in an open, community-driven manner. -
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easyNRG
A simple MATLAB implementation of Wilsons NRG-method
At the moment this code can calculate free electron gas and the SIAM (single-impurity-anderson-model) In this version, the only thing computed by the code is the energy flow. There is no calculation for any thermodynamic quantaties. The implementation is very slow and rather for educational purposes to get an idea of the NRG-method. For example: it is not considered, that only matrix elements between states, whos occupation number differs by one and S_z differs by 1/2. There is only implicit parallelisation implemented by vectorizing the time consuming parts of the code. This code is licensed under the CC BY-SA 3.0 license (http://creativecommons.org/licenses/by-sa/3.0/, http://creativecommons.org/licenses/by-sa/3.0/legalcode) -
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The Harmony of the World
A fair attempt at the Keplerian tradition to explore the solar system
Nowadays the idea of a music of the spheres, or a cosmic music that descends from the planets seems more like poetic philosophy than anything scientific. However, when the scientist Kepler discovered special principles about planetary motion, he also reconsidered the music. Apparently his observance of a harmonic law of planetary motion was reason for him to propose a computable system of pitch and harmony deriving from angular velocity. -
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AMODA is a unifying application framework for Java. The name Abstract Modeled Application reflects the idea of an API which models general parts of an application on an abstract level. Entirely developed using the Unified Modeling Language (UML).
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IDEA (Interactive Display for Evolutionary Analyses) augments PAML with a graphical interface, phylogeny reconstruction using PhyML or PHYLIP, convenient and efficient parallel processing and visualizations.
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A colorized interactive dotplot program designed for pair-wise comparisons of RNA & DNA. The original idea was from the mind of late Prof. William J. Dreyer of Caltech. The idea is to be able to see the "tapestry" of life, which comes alive with color.
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IdCREATE stands for "Idea Creation, Representation & Execution Automated Tools and Engine". This is intended to be a graphical tool for 1) representing your thoughts and ideas in a mindmap-like charts and 2) implementing them as code, article text, etc
