Search Results for "evidence"

Custom add-in (MDG technology) for Sparx Systems Enterprise Architect UML modelling tool (https://sparxsystems.com/products/ea/index.html) to create architecture descriptions using TRAK https://sf.net/projects/trak Provides: - the set of TRAK views that can be represented using UML and SysML . Each view display a custom toolbox palette with the objects and relationships that are needed for that TRAK view - relationships can be made directly from the objects on a view using the...

Using RNA-seq, tens of thousands of novel transcripts and isoforms have been identified (Djebali, et al Nature, 2012 , Carbili et al, Gene & Development, 2011) The discovery of these hidden transcriptome rejuvenate the need of distinguishing coding and noncoding RNA. However, Most previous coding potential prediction methods heavily rely on alignment, either pairwise alignment to search for protein evidence or multiple alignments to calculate phylogenetic conservation score (such as CPC , PhyloCSF and RNACode ). This is because most previously identified transcripts including protein coding RNA and short, housekeeping/regulatory RNAs such as snRNAs, snoRNA and tRNA are highly conserved. While still very useful, these approaches have several limitations: Most lncRNAs are less conserved and tend to be lineage specific which greatly limit the discrimination power of alignment-based methods. ...

...The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification.

Belief revision is a central topic in knowledge representation and reasoning. It consists in incorporating a new belief, changing as few as possible of the original beliefs while preserving consistency. Revision always considers new evidence as a better belief. Such new evidence is usually represented in the form of a propositional formula which must be preserved after the revision. Here, the Δps (PS-Merge) belief merging operator is extended in order to consider constraints, and this extension is used as a strategy for belief revision. The new evidence is treated as a constraint so the extended merging operator can obtain the revised belief base.

Experimental technique based on the measurement of first-order reversal curves (FORCs) is typically used to evidence the intensity of interactions between the switching physical entities in ferromagnetic samples. It is important to mention that the distribution of coercivity can also be identified from a FORC diagram. dFORC application represents a tool to compute the FORC distribution from the specific experimental data.

This project was moved to https://code.google.com/p/evidence-bucket/

This R package can be used to identify TRMs using experimental evidence from a single ChIP-seq experiment. It combines computational predicted transcription factor (TF) binding sites, gene expression and protein-protein interaction (PPI) data and use it to predict TRMs.

DAWGPAWS is a suite of command line programs written in Perl that accelerates annotation of genes and transposable elements in plant genomes by automating the process of running annotation programs and facilitating combined evidence annotation curation.

This application was developed by the NIHR Biomedical Research Centre at the Institute of Psychiatry and South London and Maudsley NHS Foundation Trust, in collaboration with the University of Sheffield. Its purpose is to identify the smoking status of a individual, based on text evidence in clinical notes. Currently, it classifies patients as 'current', 'past' or 'never'. It runs on the GATE infrastructure, available at http://gate.ac.uk/. Please contact richard.g.jackson@slam.nhs.uk for support/queries.

GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.

A library written in Java for performing calculations in the Dempster-Shafer theory of evidence.

LCS is an evidence-based medicine library consult service web application designed to facilitate physicians' use of the research literature. Physicians submit clinical questions to the system, librarians respond, and physicians rate the responses.

Evidence-based Guideline and Decision Support System. Provides patient specific point of care reminders in order to aid physicians provide high quality care. Input/output in the form of HL7 CDA Level 2 documents. Knowledge is encoded using Arden Syntax.

IDEM (Image and Diagnosis from the Evidence in Medicine)

BioEval, a web-based evaluation platform for one or multiple biomedical text extraction systems and the collaborative creation of gold standards. Handles evaluation of extraction of one to many related entities, plus supporting evidence and normalization