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Showing 4 open source projects for "emboss"

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1

FastAlign.pl

FastAlign is a perl script which uses the heuristic method of tfasty

...There are extra nucleotides at the end of the hit string (option -diff and by default = 10), that allow to verify if the intron start with common rules (5'-GTGCGA-... for group II intron and after an exonic T for group I intron). If you have Emboss, you can genarate a graphic with option -graph 1. Dependencies: - Perl - Bioperl - UNIX system - tfasty - Emboss (if you want a graphic)

Downloads: 0 This Week

Last Update: 2015-11-12
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2

EMBOSS Suite

EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)

1 Review

Downloads: 0 This Week

Last Update: 2013-05-09
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3

EMBOSS explorer

EMBOSS explorer is a web-based graphical user interface to the EMBOSS suite of bioinformatics tools. It is written in Perl and is exceedingly simple to install, configure, maintain and use.

1 Review

Downloads: 8 This Week

Last Update: 2013-04-24
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4

gbwget

gbwget is a command line/screen oriented tool to search in nucleotide or protein databases and to view or retrieve database entries. It can easily integrated into the EMBOSS seqence analysis Suite can also be used standalone.

Downloads: 0 This Week

Last Update: 2013-02-22
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