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Performance enhancement API for RPG Maker XP, VX, VXA.
Rpg.NET is an API built using the .NET Framework for both improving performance and enhancing the RPG Maker series (XP, VX, and VXA). Contained within are various functions and classes that extend the ability of RPG Maker in areas such as graphics, audio, and Windows API interop. Included is a Ruby script that is the wrapper around the library, so it can be used as any other script within your game.
FastAlign is a perl script which uses the heuristic method of tfasty
FastAlign.pl provides a more intuitive output to find exon-intron junctions. The query string is in amino acids and the hit string is in nucleotides. There are extra nucleotides at the end of the hit string (option -diff and by default = 10), that allow to verify if the intron start with common rules (5'-GTGCGA-... for group II intron and after an exonic T for group I intron).
If you have Emboss, you can genarate a graphic with option -graph 1.
Dependencies:
- Perl
- Bioperl
- UNIX...
EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)
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Developed for Pocket PC by students of CIIT:Syed Mohsin Abbas, Zainab Tauqir under supervision of Sir Usama Khalid.Features:Sharp,Smooth,Blur,Emboss,Rotate,Flip,Zoom,Best Fit,Load image,Load Next/previous,Save.Only bmp images(128 x 128) are supported.
EMBOSS explorer is a web-based graphical user interface to the EMBOSS suite of bioinformatics tools. It is written in Perl and is exceedingly simple to install, configure, maintain and use.
gbwget is a command line/screen oriented tool to search in nucleotide
or protein databases and to view or retrieve database entries.
It can easily integrated into the EMBOSS seqence analysis
Suite can also be used standalone.