Search Results for "dia"

The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

FREE distribution of the JAVA-XML multiplatform e-book about Jiddu Krishnamurti's Book of Life (a witty daily cookie-like reflection). Ahora, lea diariamente los pensamientos de Krishnamurti en castellano- Obtenga una agenda gratis.

MANTI is a one-stop shop N-termini annotation & evaluation solution. MANTI was previously (un)known as muda.pl ahead of v3.7, the project was renamed to MANTI.pl with v3.7 on 2019-06-24. It congregates information from different MaxQuant or DiaNN/MSFragger output files into a master file suitable explicitly for protein neo-termini analyses. The central anchor for the data congregation is the modificationSpecificPeptides.txt or diann-output.pr_matrix.tsv file - additional data is inferred...

directed graph layout program for GML (Graph-Markup-Language) graph or partial graphviz DOT graph

Computational package for identification and quantitation analysis of mass spectrometry-based proteomics data using data independent acquisition (DIA)

The NOFI ranking algorithm has been developed to assign low priority to fragment ions affected by interference. The implementation is an R script that can be customized. A future version will contain a modular version. The outline is as follows: 1) The input contains the list of SWATH fragment ion XICs from the identified and quantified peptides by software tools such as Skyline and OpenSWATH. 2) The first step in NOFI is the computation of the 4 attributes (RTd, FWHMd, IRd and IRrep)...

After a couple of years that I follow 3D printer growth, I picked up all the best solutions, as magnetic joints and prismatic linear guides, and gather together in this project. A complete 3D Delta Printer that can be built with about 200 euro (with electronics and graphical display, hotend and motors excluded). Printable area: 200mm dia and 200mm height Q*Bot is based on commercial Aluminum "L" profile, 25x25x4, which work as structure and linear guides as well. It's steady, fast and easy to build. Here you can find related files, including Bill of Materials, CAD drawings and all 3D printing objects needed. It's intended to be an open project: who wishes to collaborate with ideas and improvements, is welcome! ...

The National Library of New Zealand's Metadata Extraction Tool automatically extracts preservation-related metadata from digital files, then output that metadata in XML formats. It can be used through a graphical user interface or command-line interface. Please take the latest code from 'https://github.com/DIA-NZ/Metadata-Extraction-Tool.git'. The code on source forge will not be updated henceforth as it is moved to github.

This project is a thesis (diploma) from the University of Applied Science Aalen. It contains a logic simulator for digital technique.