Search Results for "count"
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Showing 31 open source projects for "count"
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1
ImHex
A Hex Editor for Reverse Engineers, Programmers
...Byte patching, patch management, Copy-Bytes-As-Array for many common programming languages, string and hex search, Bookmarks, Goto, Huge file support, variable column count, custom encodings and much more. ImHex includes a full custom C++-like pattern language that allows easy highlighting, decoding and analyzing of file formats. -
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WS2812FX
WS2812 FX library for Arduino and ESP8266
...Note, some effects make use of more than one color (up to three) and are programmed by specifying an array of colors. Random color introduced alternating from start and end of strip. Alternating white/red/black pixels running. Strobe effect with different strobe count and pause, controlled by speed setting. Classic Strobe effect. Cycling through the rainbow. -
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Tempico software
Software to control and analyze Tausand Tempico timing data
...The software generates histograms from captured data, supports lifetime measurements via single-photon correlation (SPC), and displays real-time graphs with adjustable fitting options. It includes a 'Counts Estimation' panel to estimate count rates per channel over time, and a 'Time Stamping' feature to record timing of events. Users can view, configure, and control the device directly from the application, as well as save both raw data and graphical results for later analysis. Tempico Software is ideal for researchers working with photon timing and lifetime studies. -
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Abacus software
Software to control and analyze Tausand Abacus coincidence devices
Abacus Software is a specialized tool for controlling and analyzing Tausand Abacus devices (AB1002, AB1004, AB1502, AB1504, AB2502, and AB2504). It enables precise measurement of temporal coincidences with up to 2-nanosecond resolution, and real-time visualization of count data from one, two, or three channels simultaneously. The software includes advanced features such as adjustable line width, sampling time configuration, direct device settings control, and the ability to save both raw data and graphical outputs for later analysis. Designed for researchers, engineers, and educators, Abacus Software provides a user-friendly interface and powerful visualization tools to support high-resolution timing analysis in experimental setups. -
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5
miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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The Simplest Manual Counter
Manual counter with the keyboard or the mouse on images
The only open source counter to count any items the simplest and easiest way with the keyboard, or the mouse specifically on images. After associating a key to each item, or a predefined graphical symbol for images, pressing the key or clicking on the image increments its associated counter, and displays (for the images) the symbol at the mouse's pointer location. Such a project is so simple a child could use it! -
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TVscript
Exploration of the removal of count variable transcripts.
> See TVscript wiki: https://sourceforge.net/p/tvscript/wiki/Home/ Related Software: 1. CStone: https://sourceforge.net/projects/cstone/ 2. CSReadGen: https://sourceforge.net/projects/csreadgen/ 3. CView: https://sourceforge.net/projects/cview/ 4. ChimSim: https://sourceforge.net/projects/chimsim/ 5. TVScript: (See wiki) 6. SeQuester: https://sourceforge.net/projects/sequester/ 7. TreeScope: https://sourceforge.net/projects/treescope/ -
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MoPAC
The Modular Pipeline for the Analysis of CRISPR screens
To facilitate the comparison of gene essentialities in two or more cell samples, we propose MoPAC (Modular Pipeline for Analysis of CRISPR screens), a Shiny-driven interactive tool for differential essentiality analysis in CRISPR/Cas9 screens. For installation and usage instructions please refer to the wiki page. -
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Javaluator
A java infix evaluator based on "Shunting Yard" algorithm.
Evaluate an arithmetic expression is as simple as: Double result = new DoubleEvaluator().evaluate("(e^3-1)*sin(pi/4)*ln(pi^2)"). But Javaluator provides you with much more ... Key features: - Functions support, including variable argument count. - Constants support: e, pi, etc ... - Variables support: Example sin(x) for x = pi/4. - Highly configurable: Reduce the built-in operator or function sets, define your own brackets. - Extensible: Define your own grammar, or extends the existing one. - Localizable: Define localized names for functions or constants. - Syntax check - Small footprint: 26kB, no additionnal library required... -
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mirplant
miRPlant: An Integrated Tool for Identification of Plant miRNA
please cite: An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275. We will create index for you if you tell us your interested plants (j.an@qut.edu.au). -
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PySptools
Hyperspectral algorithms for Python
...The functions and classes are organized by topics: * abundance maps: FCLS, NNLS, UCLS * classification: AbundanceClassification, NormXCorr, KMeans SAM, SID, SVC * detection: ACE, CEM, GLRT, MatchedFilter, OSP * distance: chebychev, NormXCorr, SAM, SID * endmembers extraction: ATGP, FIPPI, NFINDR, PPI * material count: HfcVd, HySime * noise: Savitzky Golay, MNF, whiten * sigproc: bilateral * sklearn: HyperEstimatorCrossVal, HyperSVC and others * spectro: convex hull quotient, features extraction (tetracorder style), USGS06 lib interface * util: load_ENVI_file, load_ENVI_spec_lib, corr, cov and others The library do an extensive use of the numpy numeric library and can achieve good speed. ... -
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fast_count_multi
Extremely fast NGS read counter
Counts NGS read alignments against GTF annotations in a multithreaded and scalable fashion. Benchmark: 8 core 1M annotations for 2Gb sorted reads ~30 seconds compared to ~28 minutes for bedtools multicov. Files include: fast_count_multi - reports all counts and RPKM, multithreading support fast_count_deseq - reports gene counts in deseq compatible format, multithreading support fast_count - reports all counts with no multithreading support. usage ./fast_count_multi... -
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A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
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jAgg
jAgg - Java Aggregation Operations
jAgg is a Java 5.0 API that supports “group by” operations on Lists of Java objects: aggregate operations such as count, sum, max, min, avg, and many more. It supports Super Aggregation: Rollups, Cube, and Grouping Sets. It supports analytic operations such as lag/lead and row number and more. It also allows custom aggregate and analytic operations. -
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CONMAP
Geobody connectivity analysis tool in geosciences. New version: 2.0
...Geobody detection itself runs pretty fast, with almost all execution time spent in file loading, parsing and saving. New features in version 2.0: geobody walk, vertical transitions count and mean thickness. See details running CONMAP without arguments. -
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Rise and Shine LED Clock
Arduino Powered 60 RBG Pixel Clock, with 24h alarm and count down.
The Rise and Shine LED clock has been designed to educate and encourage hacking and modifying of both software and hardware. This is a analogue style digital clock with multiple display states, a 24 hour alarm, a count down alarm, multiple alarm display states and a demo mode. One of the alarm states is a dawn simulating alarm, where the lights gradually come on over 20 minutes, enducing a natural waking sleeping pattern, with out the shock of a abrupt noisy alarm sound. Hence the name "Rise and Shine", although the name also works well with the educational objectives. -
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Immutable Sparse Wave Trees (WaveTree)
Realtime bigdata tool for bit strings up to 2^63 based on AVL forest
Realtime bigdata tool at the bit level based on immutable AVL forest which can be run in memory or, in future versions, as a merkle forest like a blockchain. Main object is a sparse bit string (Bits) that efficiently scales up to 2^63 bits normally compressed as forest has duplicated substrings. Bits objects support reading bit, byte, short, int, or long (Java primitives) at any bit index in 64 bit range. Example: instead of building a class to hold a header and then data, represent all of... -
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DimerRemover
Remove adapter dimers from NGS data
This program can be used to count or remove adapter dimers in fastq files. Using a provided adapter sequence, it generates variations of this sequence and stores them in a hash table. The reads can then be directly matched against the hash. It is far more time efficient than doing alignment. -
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Route11
C++ flow-based metaprogramming library
Route11 is a powerful C++ flow-based metaprogramming library that allows you to create and route complex dataflow systems at compile-time. Route11 uses Template Metaprogramming to construct complex "process systems" defined by static relationships between "process primitives". A process primitive is a generic host class that inherits a "process policy". The process policy defines the specific behavior of a process primitive. The general term: "process" can refer to either one of these... -
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Puran2 - Real Random Number Generator
Real Random Number Generator
...The software allow the access to the random bits like a pseudo random number generator and is easy to use. It can be mixed with random number of a tausworthe generator to grow the count of random number. -
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Project Chronos
Chronos
UPDATE, Check out our new website where we will host all future updates and improvements. The Sourceforge site will no longer be maintained and updated. www.TheChronosProject.com Project Chronos is an open source time lapse rail. It is a fully features system that offers the same level of control as professional systems costing thousands of dollars. It is also the most accurate time lapse system available capable of making accurate movements 1/125th the width of a human hair. And the... -
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Altrans
Quantification of Splicing Events
...It requires a BAM alignment file from an RNA-seq experiment and an annotation file in GTF format detailing the location of the exons in the genome. It uses paired end reads where one mate maps to one exon and the other mate to a different exon and/or split reads spanning exon exon junctions to count “links” between two exons. When there are overlapping exons, these are grouped into “exon groups” and unique portions of each exon in an exon group are identified which are used when assigning reads to an exon. The link counts ascertained from unique regions are normalized with the probability of observing such a link given the insert size distribution which is referred to as link coverage. ... -
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TheCounter was designed as a helping hand for people who need to count specifically labeled cells in histochemically or immunohistochemically stained tissue samples.
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Collatz tool is a little application to find numbers of collatz problem and modified collatz problems. You can modify the collatz factor, count of max. calculations, output. Done with C++ and bigInt Library for arbitrary precision integers.
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A tool that determines the winner of a vote through many different systems. Amongth the supported systems are: Borda count, Instant-runoff voting, Condorcet method, Ranked pairs, Cloneproof schwartz sequential droping / beatpath winner.
