Search Results for "gnu/linux" - Page 92
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Showing 9762 open source projects for "gnu/linux"
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This project implements a Cytoscape plugin for viewing and manipulating pathway maps for metabolic models created by the Model SEED (http://www.theseed.org/models). See the "Files" area for README. See Project Homepage for Tutorial.
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Tigris is an open source suite of classes and programs implemented in C++ for single particle electron microscopic image processing.
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Panglossa LexHoard
A simple vocabulary builder with Unicode support.
With LexHoard you can build vocabularies, glossaries, dictionaries or other types of wordlists. LexHoard features: -Unicode support (with a built-in Unicode editor) -export for MediaWiki and HTML format -attribution of more than one meaning/translation/relation to each word The program is written completely in native Lazarus/FreePascal. The only non-standard library needed is ZeosLib. It uses SQlite databases, so no special drivers or servers are required - although you can easily... -
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NEW OPTIMIZATION TECHNOLOGY & PLANNING EXPERIMENT. Technology is designed for multidimensional optimization practical problems with continuous object functions. Technology higher efficiency than traditional optimization methods.
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RTLSDR Scanner
A cross platform Python frequency scanning GUI for rtl-sdr
A cross platform Python frequency scanning GUI for USB TV dongles, using the OsmoSDR rtl-sdr library. In other words a cheap, simple Spectrum Analyser. More information can be found at: http://eartoearoak.com/software/rtlsdr-scanner An installer and standalone versions for Windows are located here: https://github.com/EarToEarOak/RTLSDR-Scanner/releases Sources are available on GitHub: https://github.com/EarToEarOak/RTLSDR-Scanner ** The up to date installer is no longer... -
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Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder
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CRISPR-Offinder
a CRISPR guide RNA design and off-target searching to
Summary: Design efficient and specific CRISPR small guide RNAs (sgRNAs) is one of the keys for a successful application of CRISPR technology. Importantly, more and more new RNA-guided endonucleases with different protospacer adjacent motif (PAM) have been discovered. Therefore, there is an urgent need to develop a versatile tool to design sgRNA to satisfy the requirement of different RNA-guided DNA endonucleases. To this end, a flexible sgRNA design program named “CRISPR-offinder” was... -
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Fast Expansions
Fast implementation of multiple precision arithmetics.
Fast implementation of multiple precision arithmetics using expansions as described in Shewchuk, J. R.. "Adaptive precision floating-point arithmetic and fast robust geometric predicates." Discrete & Computational Geometry 18.3 (1997): 305-363.. -
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Rabiscoscopio
Draw images on your oscilloscope screen
Draw images on your oscilloscope screen More info at project page: http://alexporto.com/rabiscoscopio -
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Analyze My Genes
Compare gene analysis results from 23andme with the human genome
This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time. -
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olego
OLego – short or long RNA-seq read mapping to discover exon junction
OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast... -
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ManyEars implements real-time microphone array processing to perform sound source localisation, tracking and separation. It was designed for mobile robot audition in dynamic environments. NOTE: Development will continue on github : https://github.com/introlab/manyears
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j2mod
Enhanced Modbus library implemented in the Java programming language
This is a fork of the jamod Modbus library, taken at version 1.2.1, released under the Apache 2 license, as contained in the SVN repository for that project. The goal of the j2mod project is to produce a more fully functioning Modbus(tm) communication library based on the Java programming language. It is the intention that this be an actively developed project, accepting submissions from professional software engineers with experience in Modbus Master and Slave development. -
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Fractest
Fractest Fractal Generator
Full-featured fractal generator for the web, providing stunning artwork and a solid, extensible platform for building and testing fractal algorithms. -
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PortOpt
A portfolio-optimizer using Markowitz(1952) mean-variance model
PortOpt [Portfolio Optimizer] is a C++ program (with Python binding) implementing the Markowitz(1952) mean-variance model with agent's linear indifference curves toward risk in order to find the optimal assets portfolio under risk. You have to provide PortOpt (in text files or - if you use the api - using your own code) the variance/covariance matrix of the assets, their average returns and the agent risk preference. It returns the vector of assets' shares that composes the optimal... -
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Petri-LLD is a graphical development environment for real-time automation control and is written in Java. It is based on a form of Petri net, and compiles to a number of programmable logic controller (PLC) languages as well as Java and Visual Basic.
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A pure Java library for manipulating content MathML version 2, including read/write and statement execution.
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PromKappa 2.0 (DNA patterns in Java)
PromKappa 2.0 (Java source code and bin)
A Java adaptation of DNA patterns based on the article "Eukaryotic genomes may exhibit up to 10 generic classes of gene promoters". by Ilie Guta (Java source code for DNA patterns) -
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pyMDMix
Molecular dynamics with aqueous-organic solvent mixtures
This python package aims to help people set up and analyze molecular dynamics simulations in aqueous-organic solvent mixtures. See D. Alvarez-Garcia et al. Journal of Medicinal Chemistry, 2014. -
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NiCE
Modeling and Simulation made NiCE!
Notice! This project is now the Eclipse Integrated Computational Environment (ICE)! The new project page is www.eclipse.org/ice and the updated source code is at www.github.com/eclipse/ice . Contact: billingsjj <at> ornl . gov The NEAMS Integrated Computational Environment (NiCE) facilitates the flexible development, composition and use of a wide range of simulations, models and analysis tools for NEAMS integrated performance and safety codes. -
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MORPHE
MORphological PHenotype Extraction
MORphological PHenotype Extraction (MORPHE) is a suite of automated image processing, visualization, and classification algorithms to facilitate the analysis of heritable and clonal red-to-green transitions that occurred during the growth of a colony. -
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Rechentrainer
Rechentrainer - Lernprogramm zum Üben der Grundrechnungsarten
Der Rechentrainer ermöglicht es, sämtliche Grundrechnungsarten individuell zu üben. Er eignet sich besonders für Kinder von 6 bis 12 Jahren. Im Programm kann man individuell die verschiedenen Grundrechnungsarten (Addition, Subtraktion, Multiplikation und Division) auswählen und üben. Für die Strichrechnungen ist der Zahlenraum einstellbar. Bei den Punktrechnungen kann man einzelne Mal- oder Divisionsreihen auswählen. Das Programm gibt motivierende positive Rückmeldungen bei richtig... -
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This java program will ultimately solve grid-type logic problems if given enough clues in a pseudo english language. Features a user friendly GUI letting the user know the progression of the solving process based on the clues entered.
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The project "OpenML for Predictive Modelling in Food" is a community effort to establish an open information exchange data standard to facilitate free information exchange between different software tools developed within the community of predictive modelling in food. This open, free and independent community portal has been established to support the development of open information exchange standard(s) for the domain of predictive modelling in food (PMF). The following portal...
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Caneda
Caneda (Circuits and Networks EDA) is an open source EDA software.
Caneda (Circuits and Networks EDA) is an open source EDA software focused on easy of use and portability. While in the short term schematic capture and simulation is the primary goal, in the long term future, PCB and layout edition will be covered.