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The Vyper Dynamic Server framework is a pure-java library for use in the creation of backend / server platforms. VDS is specifically tailored for financial applications, and suited for many high-throughput, asynchronous and distributed environments.
The project Intergeo co-funded by the Community programme eContentplus develops an open-source library for the common file format it defines to allow developers of dynamic geometry systems to quickly integrate read support for such files.
The MML Framework is a temporal-spatial biological model representation language. The MML Project provides the application tool set which facilitates the goals of representing biological models using the MML specifications.
BioWebAuth (Biometrics for Web Authentication) is an open source Java framework intended to provide single sign-on web authentication based on BioAPI-compliant biometric software or devices. It uses the JA-SIG Central Authentication Service architecture.
Blunder is an automated tool for analyzing chained exceptions in Java. It's usefull for classify, generate a customized error message and a list for possible solutions.
QASE is a Java-based API designed to provide all the functionality needed to create game agents in Quake 2. Powerful enough to facilitate high-end research, it is also suitable for undergrad courses geared towards classic AI and agent-based systems.
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mzSquash is a compression tool for mzML files, an XML-based standard developed by HUPO PSI (http://www.psidev.info) for spectrometer output. All development has ceased. The tool may be useful educationally, but is not a recommended utility.
The new Unit Conversions Lite 1.0.2 can be useful for convert some popular units. For example: oz -> g or in -> cm and so on... This application is written in Java programming language.
JMulTiR is an econometrics package designed for univariate and multivariate time series analysis. The numerical computations and graphics are done in R (www.r-project.org), the GUI is programmed in Java Swing with the jstatcom framework.
cismap is a Java based client for OGC Web Mapping Services (WMS, WFS, ...). It provides a browser oriented user interface with features like history, bookmarks. unlike web technology based clients it provides a very powerfull an comfortable user interfac
The OpenNLP Interlinear Glossed Text (IGT) Editor software supports transcriptions and interlinear glosses for language documentation with semi-automated annotation.
Tool for retrieve, via Web, statistics from bug trackers in free/open source software projects. The aim of this software is to provide researchers with statistics about bug-fixing process in a project
A command line java tool that allows creating images of earthquake occurrences plotted on a map over time.
These images can then be used to create a video / animation (with a seperate tool like mencoder)
Goldify is a set of tools that allow automated addition of links into electronic documents. Its main purpose is to allow such addition of links into documents that wish to link to the IUPAC GoldBook (http://goldbook.iupac.org).
DeHinter is an enhanced file-sharing client that exploits the topology of the spontaneous communities of like-minded people to enable personalized social filtering techniques. The P2P layer is based on the Limewire Gnutella client.
jSim for Gromacs is a Graphical User Interface for the Molecular Dynamics Package Gromacs. It has a project style interface to organize your md simulations. It is also possible to start md simulations on remote computers with ssh.
Yawi 3D (Yet Another Wand for ImageJ) implements a 3D selection tool plugin for ImageJ suitable for CT scanned images; it helps in the selection of 3D Region Of Interest (ROI) containing a tumor mass; it also provides a measure of ROI volume
Tipa2Unicode is a little stand-alone application which lets you input Tipa-shortcuts and then displays Unicode symbols. You can then paste either side of the conversion to LaTeX or a word processor.
Now part of Apache's Mahout machine learning project at http://mahout.apache.org/-- please see there for latest info and code and releases and support!