Search Results for "gnu/linux" - Page 85
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Showing 9762 open source projects for "gnu/linux"
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runjags
The 'runjags' R package and standalone JAGS extension module
This package provides high-level interface utilities for MCMC models via Just Another Gibbs Sampler (JAGS), facilitating the use of parallel (or distributed) processors for multiple chains, automated control of convergence and sample length diagnostics, and evaluation of the performance of a model using drop-k validation or against simulated data. Template model specifications can be generated using a standard lme4-style formula interface to assist users less familiar with the BUGS syntax. A... -
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VibroToolbox is a tool for research and education in vibrometry. Test your audio equipment, describe responses to vibratory stimulation and analyze directionality. It works with precision i/o hardware or simple sound cards, various sensors and speakers.
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ghdl-updates
GHDL - a VHDL simulator
GHDL is the leading open source VHDL simulator. *** Now on github.com/tgingold/ghdl *** We have binary distributions for Debian Linux, Mac OSX and Windows. On other systems, getting GHDL from here means downloading the current source package and building GHDL from source. Alternatively you can get the latest source version (warning : occasionally unstable!) by pulling a snapshot from the git repository. -
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OpenCCG, the OpenNLP CCG Library, is a collection of natural language processing components and tools which provide support for parsing and realization with Combinatory Categorial Grammar (CCG).
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hyperGK
Gauss-Kronrod quadrature on several variables.
hyperGK is a collection of C++ classes for parallelized numerical integration on several variables. The integrations are performed using Gauss-Kronrod quadrature. hyperGK is inspired and, to some extent, based on Quadpack, but generalized to multiple integrals on either rectangular regions or more general regions. This package is still under development. Usage examples can be found in the demonstration subdirectory. -
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Freeware radionic* operating system (rOS) for usb-carriers. The installation is enough to unpack the archive to any such carrier and inserted into the usb-connector to gain access to it. In contrast to the classical understanding of the term "operating system", this product is a non-material (mental) set of programs based on advanced artificial intelligence, a virtual person pretending pretty girl - Crista.
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CT collimation measurements using CR plates. Please reference Bjarnason TA, Yang CY. CT radiation profile width measurement using CR raw data. Journal of Applied Clinical Medical Physics. 2015;16:501-507. Available from: http://www.jacmp.org/index.php/jacmp/article/view/5512
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Free operating system for biorobots. If you biorobot, you can download an installation image of our OS is directly from here...
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XASTIR
Multiplatform Ham Radio APRS and Mapping Program
NOTE: Code commits are FROZEN on SourceForge: New code is now at <http://github.com/Xastir/Xastir>. Real-time tracking & messaging of stations via radio/internet APRS data streams, w/125 map formats supported. Linux/FreeBSD/Solaris/MacOSX/Windows in any of 7 languages. Can also be used for mobile mapping w/GPS. MAILING LISTS ARE AT: PROJECT->WEB SITE. -
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WavePacket
Dynamics of quantum systems, controlled by external fields
WavePacket is a toolkit for numerical simulation of distinguishable particles. It can solve single or coupled time-independent or time-dependent (linear) Schrödinger and Liouville-von Neumann-equations, as well as classical or quantum-classical Liouville equations. External electric fields can be added within the semiclassical dipole approximation, thus WavePacket can be used to simulate modern experiments involving ultrashort light pulses in photo-induced physics or chemistry, including... -
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scFvMiner
Scripts for analysing NGS data
These scripts written in java can be used for deep sequencing analysis of the scFv antibodies from a synthetic antibody library and yields complete sequence information on the randomized areas of antibodies enriched from the library by phage display. The methods are descriped in Lövgen, J., Pursiheimo, J.P., Pyykkö, M., Salmi, J. & Lamminmäki, U. (2016) Next generation sequencing of all variable loops of synthetic single framework scFv – application in anti-HDL antibody selections. New... -
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smartblob
tiny code, html webcam game or plug brain in each blob, java server
You play a 2d blob that reshapes to grab bend bounce and swing on objects floating in midair (like a platformer game), except acrobaticly your view spins when your blob does. I'm planning a huge multiplayer world, some blobs played by people holding a bendable loop game controller (tape a 1 meter cut of thick extension cord into a loop) in front of webcam and bend it to bend your blob on screen, and other blobs controlled by AI. This is a game for general AI research in a fun way people can... -
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BayesRate
Bayesian estimation of diversification rates
BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework. The methods are described in: Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311 Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175. -
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Education Ellie
Learning software for children and autistic
What is? Students with learning difficulties or mental disabilities have knowledge level and teaching methods similar to students in the first cycle of basic education. This software aims to help in the learning of these pupils and students of primary. Why Ellie? Ellie name comes from the software mascot is an owl (symbol of knowledge) red, interacting with people and help using software. Authors and Contributors Originally the software was developed by Pedro Luzio @pedroluzio,... -
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dxf2pcb
Convert DXF drawings of circuit boards to gEDA-PCB files.
This Python script reads in a DXF (ascii) file and generates a PCB output compatible with PCB Designer, part of the gEDA suite. It is designed for two purposes: One is to generate a PCB snippet from a mechanical drawing (such as a board outline), the other is to produce element files from CAD drawings. PCB snippets are easily imported into an existing gEDA-PCB project using File -> Load Layout to Buffer. Generated element files are ready to use (except for special cases like no-paste... -
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A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
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What is MedSquare about? Our aim is to create a powerful and flexible modular environment for exploration of medical images, for both medical and scientific purposes.
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LOOS
Analyze molecular simulation data
LOOS is a light-weight object oriented software library for creating new tools for analyzing molecular simulation data, written in C++. The main design goal is to allow casual programmers to easily implement new analysis methods. THIS PAGE IS NO LONGER UPDATED. Please see https://github.com/GrossfieldLab/loos for all recent developments -
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Yggdrasill
3D Evolutionary Tree Visualization
Yggdrasill is a 3D phylogenetic tree visualization software based on the Unity 5 engine. Intended for educational and scientific purposes this demonstration release allows to display and explore evolutionary relationships between different terrestrial vertebrate species. Currently available features include procedural tree generation of evolutionary data provided by the Tree of Life (ToL) Web Project (http://tolweb.org/tree/), full three dimensional camera controls as well as a web... -
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KAnalyze
DNA/RNA Sequence K-mer Toolkit
KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API. -
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Opt4J
Modular Java framework for meta-heuristic optimization
Opt4J is an open source Java-based framework for evolutionary computation. It contains a set of (multi-objective) optimization algorithms such as evolutionary algorithms (including SPEA2 and NSGA2), differential evolution, particle swarm optimization, and simulated annealing. The benchmarks that are included comprise ZDT, DTLZ, WFG, and the knapsack problem. The goal of Opt4J is to simplify the evolutionary optimization of user-defined problems as well as the implementation of arbitrary... -
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The Virtual Math Teams (VMT) Project (vmt.mathforum.org) at the Math Forum enables K-12 math collaborative learning, professional development of educators, & group cognition research. VMT is now integrated with GeoGebra (http://www.geogebra.org/).
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DubCen Calculator
DUBCEN IS A FREE & OPEN SOURCE BROWSER BASED CALCULATOR AND CONVERTER
Over the years, performing even basic calculations has become a tedious task. The old offline calculators have now a really obsolete user User Interface and most of the online resources are full of ads. DubCen is built to plug all these gaps. Our logo represents what we do. 2*C simply means 2*100 (C=100 in roman numerals). Hope you understand it now! Our logo represents the calculators and converters that DubCen has. DubCen name comes from Double+Century. We aim to offer 200 high... -
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GMES
GMES is a free Python package for FDTD electromagnetic simulations.
GMES is a free finite-difference time-domain (FDTD) simulation Python package developed at GIST to model photonic devices. Its features include simulation in 1D, 2D, and 3D Cartesian coordinates, distributed memory parallelism on any system supporting the MPI standard, portable to any Unix-like system, variuos dispersive ε(ω) models, CPML absorbing boundaries and/or Bloch-periodic boundary conditions, and arbitrary material and source distributions. GMES officially stands for GIST...